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Report for CCDS71412.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71412.1 Public Mus musculus 4 Psip1 23 108 98 CCDS HistoryNCBI Gene:101739Re-query CCDS DB by CCDS ID:71412.1Re-query CCDS DB by GeneID:101739See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71412.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107215.8 ENSMUSP00000102833.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107215.8Link to Ensembl Protein Viewer:ENSMUSP00000102833.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107215Re-query CCDS DB by Protein ID:ENSMUSP00000102833
Original member Current member NCBI NM_001290527.2 NP_001277456.1 Accepted alive Link to Nucleotide Sequence:NM_001290527.2Link to Protein Sequence:NP_001277456.1Re-query CCDS DB by Nucleotide ID:NM_001290527Re-query CCDS DB by Protein ID:NP_001277456Link to BLAST:NP_001277456.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277456.1 331 Q99JF8-2 331 100% 0 0

Chromosomal Locations for CCDS 71412.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 83462449 83462473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83463595 83463713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83464925 83465150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83466708 83466783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83468583 83468676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83473040 83473102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83474278 83474382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83476282 83476420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83482457 83482533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83485717 83485788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (996 nt):
ATGACTCGCGATTTCAAACCTGGAGACCTCATCTTCGCCAAGATGAAAGGTTATCCTCATTGGCCAGCTC
GAGTAGATGAAGTTCCTGATGGAGCTGTAAAACCACCCACAAACAAACTACCCATTTTCTTTTTTGGAAC
CCATGAGACTGCTTTTTTAGGACCAAAGGACATATTTCCTTATTCAGAAAATAAGGAAAAGTATGGCAAA
CCAAATAAACGGAAAGGTTTTAATGAAGGATTGTGGGAGATAGATAACAATCCGAAAGTGAAATTTTCAA
GTCAACAGGCATCAACTAAACAATCCAATGCATCGTCTGATGTTGAAGTGGAAGAAAAAGAGACTAACGT
TTCAAAGGAAGACACTGATCAGGAAGAAAAGGCCAGCAATGAGGATGTGACTAAAGCAGTTGACATAACC
ACTCCAAAAGCTGCCAGGCGAGGAAGAAAGAGAAAGGCTGAAAAACAAGTAGACACTGAAGAGGCGGGAA
TGGTGACTGCAGCAACCGCTTCTAATGTGAAAGCAAGTCCTAAGAGAGGACGACCTGCAGCTACTGAAGT
CAAGATTCCCAAACCAAGAGGCAGACCTAAAGTGGTAAAGCAGCCTTGTCCTTCAGACGGTGACATGGTT
ATTGATGAAGATAAAAGTAAAAAAAAGGGACCAGAGGAGAAACAACCTAAAAAGCAGCTTAAAAAAGAGG
AAGAAGGCCAAAAGGAAGAAGAGAAGCCAAGAAAAGAACCAGATAAGAAAGAAGGGAAGAAAGAAGTTGA
ATCTAAACGGAAAAATTTAGCTAAACCAGGGGTTACATCAACCTCTGATTCAGAAGACGAAGACGATCAA
GAGGGTGAAAAGAAGAGAAAGGGTGGAAGGAACTTCCAGGCTGCTCACAGGAGGAACATGCTAAAAGGCC
AACATGAGAAAGAAGCTGGAGATCGGAAACGCAAGCAGGAGGAACAAATGGAAACTGAGCACCAAACAAC
ATGTAATCTACAGTAA

Translation (331 aa):
MTRDFKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPKDIFPYSENKEKYGK
PNKRKGFNEGLWEIDNNPKVKFSSQQASTKQSNASSDVEVEEKETNVSKEDTDQEEKASNEDVTKAVDIT
TPKAARRGRKRKAEKQVDTEEAGMVTAATASNVKASPKRGRPAATEVKIPKPRGRPKVVKQPCPSDGDMV
IDEDKSKKKGPEEKQPKKQLKKEEEGQKEEEKPRKEPDKKEGKKEVESKRKNLAKPGVTSTSDSEDEDDQ
EGEKKRKGGRNFQAAHRRNMLKGQHEKEAGDRKRKQEEQMETEHQTTCNLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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