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Report for CCDS71377.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71377.1 Public Mus musculus 4 Clta 23 108 98 CCDS HistoryNCBI Gene:12757Re-query CCDS DB by CCDS ID:71377.1Re-query CCDS DB by GeneID:12757See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71377.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107847.9 ENSMUSP00000103479.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107847.9Link to Ensembl Protein Viewer:ENSMUSP00000103479.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000107847Re-query CCDS DB by Protein ID:ENSMUSP00000103479
Original member Current member NCBI NM_001290470.2 NP_001277399.1 Accepted alive Link to Nucleotide Sequence:NM_001290470.2Link to Protein Sequence:NP_001277399.1Re-query CCDS DB by Nucleotide ID:NM_001290470Re-query CCDS DB by Protein ID:NP_001277399Link to BLAST:NP_001277399.1

Chromosomal Locations for CCDS 71377.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 44012792 44013008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44018813 44018850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44019874 44019991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44025449 44025560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44031400 44031435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44032401 44032572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (693 nt):
ATGGCCGAGTTGGATCCATTCGGCGCTCCCGCCGGTGCGCCCGGTGGCCCCGCTCTAGGAAACGGGGTGG
CGGGCGCCGGCGAAGAAGACCCGGCCGCGGCCTTCTTGGCGCAGCAAGAGAGTGAGATTGCGGGCATCGA
GAACGATGAGGCCTTCGCCATCCTGGACGGCGGCGCCCCCGGGCCGCAGCCACACGGCGAGCCGCCGGGA
GGTCCGGATGCTGTTGACGGAGTGATGAATGGTGAATACTACCAGGAGAGCAATGGTCCAACAGACAGTT
ACGCAGCCATTTCAGAAGTGGATCGATTGCAGTCAGAGCCTGAAAGTATCCGTAAGTGGAGAGAAGAGCA
GACAGAGCGCCTGGAAGCCCTCGATGCCAATTCTCGGAAGCAAGAAGCGGAGTGGAAAGAAAAGGCGATA
AAGGAGCTGGAAGAGTGGTATGCGAGGCAGGACGAGCAGCTACAGAAGACAAAGGCAAACAACAGCACAA
ACATAAACCATCCTTGCTACAGCCTAGAACAGGCAGCAGAAGAAGCCTTTGTAAACGACATTGACGAGTC
ATCCCCAGGCACTGAGTGGGAGCGGGTGGCCCGCCTGTGTGACTTTAACCCCAAGTCCAGCAAACAGGCC
AAAGATGTCTCTCGCATGCGCTCAGTCCTCATCTCCCTGAAGCAGGCCCCCCTGGTGCACTGA

Translation (230 aa):
MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAPGPQPHGEPPG
GPDAVDGVMNGEYYQESNGPTDSYAAISEVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAI
KELEEWYARQDEQLQKTKANNSTNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQA
KDVSRMRSVLISLKQAPLVH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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