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Report for CCDS71178.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71178.1 Public Mus musculus 2 Ralgapb 23 108 98 CCDS HistoryNCBI Gene:228850Re-query CCDS DB by CCDS ID:71178.1Re-query CCDS DB by GeneID:228850See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71178.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109485.8 ENSMUSP00000105111.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109485.8Link to Ensembl Protein Viewer:ENSMUSP00000105111.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109485Re-query CCDS DB by Protein ID:ENSMUSP00000105111
Original member Current member NCBI NM_001291137.1 NP_001278066.1 Accepted alive Link to Nucleotide Sequence:NM_001291137.1Link to Protein Sequence:NP_001278066.1Re-query CCDS DB by Nucleotide ID:NM_001291137Re-query CCDS DB by Protein ID:NP_001278066Link to BLAST:NP_001278066.1

Chromosomal Locations for CCDS 71178.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 158420844 158421029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158426165 158426367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158430417 158430580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158432734 158432920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158435458 158435589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158436490 158436668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158437003 158437151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158437260 158437476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158439529 158439564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158440770 158440971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158443238 158443405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158443827 158443941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158444573 158444720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158446129 158446193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158448320 158448449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158450177 158450310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158454124 158454306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158456451 158456602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158462071 158462258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158464072 158464178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158465819 158465971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158466736 158466945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158473123 158473281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158476105 158476270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158477641 158477763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158482365 158482501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158492364 158492472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158492935 158493013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158494625 158494773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158495451 158495644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4524 nt):
ATGTACTCTGAGTGGCGGTCACTGCATTTGGTGATTCAGAGTGATCAAGGCCATACCAGTGTGCTACACA
GCTATCCAGAGAGTGTTGGGCGAGAGGTGGCGAATGCAGTGGTCCGTCCTCTTGGGCAGGCATTAGGTAC
TTCTTCAGTGGCTGGTAGTGAGAGTTTATTAAAAACTGACAAAGAAGTAAAATGGACCATGGAAGTAATT
TGCTATGGACTGACCCTTCCATTAGATGGAGAGACTGTAAAATATTGTGTTGATGTATATACAGATTGGA
TTATGGCTTTGGTGTTGCCAAAAGATTCTATTCCATTACCCATTATTAAAGAACCTAATCTATATGTTCA
AAGTATATTAAAACATTTACAAAATCTTTTTGTACCAAGACAGGAACAGGGCTCCAGTCAAATCCGACTA
TGCTTACAAGTTCTGAGAGCCATTCAGAAACTGGCCCGGGAGTCATCCATCATGGCTCGAGAAACCTGGG
AAGTCTTACTGTTGTTTCTTCTGCAAATTAATGACATACTTCTGGCCCCACCAACTGTTCAAGGTGGCAT
TGCTGAGAATCTAGCAGAGAAGCTGATTGGTGTTCTCTTTGAAGTTTGGTTACTAGCTTGCACCCGGTGC
TTCCCAACACCTCCTTATTGGAAGACAGCCAAGGAGATGGTGGCTAACTGGAGGCACCACCCTGCAGTGG
TGGAGCAGTGGAGCAAGGTTATCTGTGCACTGACCTCCAGATTGCTCCGCTTTACATACGGTCCTTCATT
TCCTCCATTTAAAGTTCCTGATGAAGATGCCAATCTCATCCCTCCAGAAATGGACAATGAGTGTATTGCA
CAAACATGGTTTCGATTTTTACACATGCTAAGTAACCCCGTGGATCTGAGTAACCCAGCTGTTATAAGCT
CAACTCCCAAGTTTCAAGAACAGTTCCTGAATGTGAGCGGGATGCCACAGGAGCTGAGCCAGTACCCCTG
CCTTAAACATCTGCCTCAGATATTCTTTCGTGCCATGCGTGGAATCAGCTGTCTGGTGGATGCATTCTTA
GGCATTTCTCGACCTCGATCAGACAGTGCTCCCCCAACACCCGTGAATAGATTAAGTATGCCCCAGAGTG
CTGCTGTGAATACCACACCACCACATAACCGGAGGCACCGGGCTGTTACTGTGAACAAGGCCACAATGAA
GACGAGTACAGTTACTACTGCTCACACCTCAAAAGTCCAGCACCAGGCATCCTCCACCTCTCCTCTGTCC
AGTCCAAATCAGACTAGTTCAGAACCCAGGCCGCTGCCTGCCCCCCGAAGACCAAAGGTTAACAGCATCT
TGAATCTCTTTGGATCGTGGTTATTCGATGCAGCATTTGTTCACTGTAAACTCCATAATGGAATAAACAG
AGACAACAGCATGACTGCATCTTTTATCCAAATTCTTCTTTCTTATAAATCTTCCATTGCAACCCAAGCT
AGCATGGAGTTTCGACGGAAAGGGTCCCAAATGTCAACAGACACCATGGTTTCCAACCCTGTGTTTGATG
CCAGTGAATTTCCTGATAACTATGAAGCAGGAAGAGCTGAGGCTTGTGGGACATTATGTAGGATTTTTTG
TAGCAAGAAGACTGGAGAAGAGATTCTGCCAGCTTATTTATCCAGATTTTACATGCTTTTAATTCAAGGT
TTGCAGATAAATGATTATGTATGCCATCCTGTCTTGGCCAGCGTTATTCTAAACTCCCCTCCTTTGTTCT
GCTGTGACTTGAAAGGGATTGATGTTGTGGTTCCTTACTTTATTTCAGCTCTTGAAACCATTTTGCCTGA
CAGAGAACTCTCAAAATTCAAAAGCTATGTAAATCCAACAGAATTGAGAAGGTCATCCATTAATATCCTG
CTTTCTTTGTTGCCCCTCCCTCATCATTTTGGCACAGTCAGATCTGAGGTGGTCCTAGAAGGAAAGTTTA
GTAATGATGACAGCTCTTCTTATGATAAACCAATAACTTTTCTGTCCCTGAAGCTGAGACTTGTGAATAT
ACTAATAGGTGCCTTGCAAACAGAAACGGACCCTAACAACACCCAAATGATACTAGGGGCAATGTTAAAT
ATTGTTCAAGATTCTGCACTTTTAGAAGCCATTGGTTGCCAAATGGAAATGGGTGGTGGAGAAAACAACC
TGAAGAGTCATAGTCGCACAAACAGTGGCATTAGCTCAGCAAGTGGAGGAAGCACAGAGCCTACAACCCC
TGATAGCGAGAGACCTGCTCAAGCTCTTCTGAGGGATTATGCTCTTAATACAGATTCAGCTGCTGGGCTC
CTGATTCGCAGCATTCATCTCGTCACTCAACGACTCAACTCCCAGTGGCGGCAAGATATGAGCATATCCT
TGGCAGCTCTAGAGCTCCTCTCTGGCCTGGCAAAGGTGAAGGTGATGGTTGACTCAGGAGACCGGAAGCG
TGCCATCAGTTCTGTGTGCAGCTACATCGTATACCAATGCAGTCGGCCAGCTCCTCTTCACTCCCGGGAT
CTGCACTCCATGATAGTGGCAGCATTTCAGTGTCTCTGTGTCTGGCTGACAGAGCACCCTGATATGCTGG
ATGAAAAGGATTGCCTTAAGGAAGTACTGGAGATTGTAGAACTGGGTATCTCAGGAAGCAAATCCAAGAA
CAGTGAGCAAGAAGTCAAGTACAAAGGTGATAAGGAGCCGAACCCTGCATCCATGAGGGTAAAGGACGCC
GCCGAAGCCACTCTAACATGTATCATGCAGTTGCTTGGCGCATTTCCTTCACCCAGTGGTCCTGCTTCTC
CTTGTAGTCTGGTGAATGAGACCACTCTGATCAAATACTCCAGGCTGCCAACCATAAACAAGCATAGTTT
CCGGTACTTTGTTTTGGATAACAGTGTCATCCTGGCAATGCTGGAGCAACCGCTTGGAAATGAGCAGAAT
GACTTTTTCCCCTCTGTCACTGTGCTGGTCCGGGGAATGTCTGGAAGACTTGCGTGGGCTCAGCAGCTTT
GCCTTTTACCCAGAGGAGCAAAAGCAAATCAGAAGCTTTTTGTGCCTGAACCTCGCCCAGTTCCTAAAAA
TGATGTTGGATTTAAATATTCTGTGAAACATCGGCCATTTCCTGAAGAGGTGGACAAGATTCCTTTTGTA
AAAGCAGACTTGAGCATTCCAGATTTACATGAAATTGTCACTGAAGAATTAGAAGAGAGGCATGAAAAAT
TAAGAAGTGGTATGGCACAACAAATTGCTTATGAGATGCACCTGGAACAGCAGAGCGAGGGGGAACTGCA
GAAGCGAAGCTTCCCTGACCCTGTTACGGACTGTAAGCCTCCACCTCCTGCCCAGGAATTTCAGACAGCC
CGCCTTTTCCTTTCTCACTTTGGATTTTTATCCTTAGAGGCATTAAAGGAACCTGCAAATAGTCGTCTAC
CTCCTCATCTTATTGCACTCGATTCTACCATACCTGGATTTTTTGATGACATTGGGTATCTGGATCTCCT
GCCATGCCGGCCTTTTGACACTGTTTTTATTTTCTACATGAAGCCAGGTCAGAAAACAAACCAAGAGATT
TTAAAGAATGTGGAGTCTTCCAGAAATGTTCAGCCACATTTCCTAGAATTTTTGCTCTCCCTGGGCTGGT
CAGTAGATGTGGGGAAACACCCCGGTTGGACAGGACATGTGTCCACCAGTTGGTCAATCAATAGTTGTGA
TGATGGTGAAGGGTCTGAACCAGATGAAATAACTTCCTCTGAAGACGTTGGGGCTAGCATTTTCAACGGG
CAGAAGAAGGTGCTGTATTATGCTGATGCCCTAACAGAAATAGCTTTTGTGGTTCCTTCTCCTGTGGAGT
CACTGACTGATTCATTGGAAAGTAACATCTCAGACCAAGATAGTGACTCAAATATGGATCTTATGCCGGG
AATTCTGAAGCAGCCACCCCTGACACTTGAGTTGGTCCCCAATCACACAGACAGTCTTAATTCCTCACAG
AGGCTCAGTCCCAGTTCCAGAATGAAGAAGCTGCCTCAGGGTCGCCCTGTGCCCCCGCTTGGACCTGAGA
CAAGAGTATCTGTAGTCTGGGTGGAACGCTACGATGATATAGAAAACTTTCCACTCTCAGATCTGATGAC
AGAGATCAGCACTGGTGTAGAGACTACTGCAAATAGTAGCACTTCTCTGAGATCTACAACTCTTGAAAAA
GAAGTCCCAGTAATCTTCATTCACCCTTTAAACACTGGATTGTTCCGGATAAAAATCCAAGGAGCCACTG
GAAAATTTAACATGGTCATACCTCTGGTTGATGGGATGATAGTCAGCCGTCGAGCACTTGGCTTTCTGGT
GAGGCAGACGGTAATAAACATTTGTAGAAGAAAGAGACTGGAGAGTGATTCCTACAGTCCACCACATGTC
CGTCGGAAACAGAAAATCACTGACATTGTCAACAAATATCGGAATAAGCAGTTGGAGCCAGAGTTTTATA
CTGCCCTTTTCCAGGAGGTTGGACTCAAGAACTGCAGTTCTTAG

Translation (1507 aa):
MYSEWRSLHLVIQSDQGHTSVLHSYPESVGREVANAVVRPLGQALGTSSVAGSESLLKTDKEVKWTMEVI
CYGLTLPLDGETVKYCVDVYTDWIMALVLPKDSIPLPIIKEPNLYVQSILKHLQNLFVPRQEQGSSQIRL
CLQVLRAIQKLARESSIMARETWEVLLLFLLQINDILLAPPTVQGGIAENLAEKLIGVLFEVWLLACTRC
FPTPPYWKTAKEMVANWRHHPAVVEQWSKVICALTSRLLRFTYGPSFPPFKVPDEDANLIPPEMDNECIA
QTWFRFLHMLSNPVDLSNPAVISSTPKFQEQFLNVSGMPQELSQYPCLKHLPQIFFRAMRGISCLVDAFL
GISRPRSDSAPPTPVNRLSMPQSAAVNTTPPHNRRHRAVTVNKATMKTSTVTTAHTSKVQHQASSTSPLS
SPNQTSSEPRPLPAPRRPKVNSILNLFGSWLFDAAFVHCKLHNGINRDNSMTASFIQILLSYKSSIATQA
SMEFRRKGSQMSTDTMVSNPVFDASEFPDNYEAGRAEACGTLCRIFCSKKTGEEILPAYLSRFYMLLIQG
LQINDYVCHPVLASVILNSPPLFCCDLKGIDVVVPYFISALETILPDRELSKFKSYVNPTELRRSSINIL
LSLLPLPHHFGTVRSEVVLEGKFSNDDSSSYDKPITFLSLKLRLVNILIGALQTETDPNNTQMILGAMLN
IVQDSALLEAIGCQMEMGGGENNLKSHSRTNSGISSASGGSTEPTTPDSERPAQALLRDYALNTDSAAGL
LIRSIHLVTQRLNSQWRQDMSISLAALELLSGLAKVKVMVDSGDRKRAISSVCSYIVYQCSRPAPLHSRD
LHSMIVAAFQCLCVWLTEHPDMLDEKDCLKEVLEIVELGISGSKSKNSEQEVKYKGDKEPNPASMRVKDA
AEATLTCIMQLLGAFPSPSGPASPCSLVNETTLIKYSRLPTINKHSFRYFVLDNSVILAMLEQPLGNEQN
DFFPSVTVLVRGMSGRLAWAQQLCLLPRGAKANQKLFVPEPRPVPKNDVGFKYSVKHRPFPEEVDKIPFV
KADLSIPDLHEIVTEELEERHEKLRSGMAQQIAYEMHLEQQSEGELQKRSFPDPVTDCKPPPPAQEFQTA
RLFLSHFGFLSLEALKEPANSRLPPHLIALDSTIPGFFDDIGYLDLLPCRPFDTVFIFYMKPGQKTNQEI
LKNVESSRNVQPHFLEFLLSLGWSVDVGKHPGWTGHVSTSWSINSCDDGEGSEPDEITSSEDVGASIFNG
QKKVLYYADALTEIAFVVPSPVESLTDSLESNISDQDSDSNMDLMPGILKQPPLTLELVPNHTDSLNSSQ
RLSPSSRMKKLPQGRPVPPLGPETRVSVVWVERYDDIENFPLSDLMTEISTGVETTANSSTSLRSTTLEK
EVPVIFIHPLNTGLFRIKIQGATGKFNMVIPLVDGMIVSRRALGFLVRQTVINICRRKRLESDSYSPPHV
RRKQKITDIVNKYRNKQLEPEFYTALFQEVGLKNCSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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