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Report for CCDS71172.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71172.1 Public Mus musculus 2 Dlgap4 23 108 98 CCDS HistoryNCBI Gene:228836Re-query CCDS DB by CCDS ID:71172.1Re-query CCDS DB by GeneID:228836See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71172.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109568.9 ENSMUSP00000105196.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109568.9Link to Ensembl Protein Viewer:ENSMUSP00000105196.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000109568Re-query CCDS DB by Protein ID:ENSMUSP00000105196
Original member Current member NCBI NM_001277187.1 NP_001264116.1 Accepted alive Link to Nucleotide Sequence:NM_001277187.1Link to Protein Sequence:NP_001264116.1Re-query CCDS DB by Nucleotide ID:NM_001277187Re-query CCDS DB by Protein ID:NP_001264116Link to BLAST:NP_001264116.1

Chromosomal Locations for CCDS 71172.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 156700679 156701674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156704410 156704654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156705856 156705970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156711021 156711261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156745835 156746196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156748332 156748420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156748944 156749356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156760851 156760942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156761773 156761928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156762685 156762903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2928 nt):
ATGAAAGGCCTCGGTGACAGCCGCCCCCGCCACCTCTCCGACAGCCTGGACCCACCTCACGAGCCCCTCT
TTGCTGGACCTGACCGAAACCCCTACCTGCTGTCGCCCACCGAGGCCTTTGCCCGGGAAGCCCGCTTCCC
CGGGCAAAACACACTGCCGGGGGATGGGCTCTTCCCACTCAACAACCAGCTGCCCCCACCAAGCAGCACC
TTCCCCCGAATCCACTACAACTCCCACTTTGAGGTGCCCGAGGAAAGCCCATTCCCCAGCCACGCCCAAG
CCACTAAGATCAATCGGCTGCCCGCCAACCTCCTGGACCAGTTTGAGAAACAACTGCCTATCCACCGAGA
TGGCTTCAGCACCCTCCAGTTCCCCCGGGGGGAGGCCAAGGCCAGGGGTGAGAGTCCAGGCCGCATTCGC
CACCTGGTCCACTCTGTCCAGCGTCTCTTCTTCACTAAGGCACCCTCCATGGAGGGCACCGCGGGCAAGG
TGGGTGGCAATGGCAGCAAGAAAGGTGGCCTGGAGGACGGAAAAGGCCGGAGGGCCAAAAGCAAGGAACG
GGCCAAGGCTGGGGAGCCCAAACGGCGAAGCCGCTCCAACATCTCAGGCTGGTGGAGTTCAGATGACAAC
TTGGACGGTGAGGGTGGTGCCTTCCGCAGTGGCCCTGCCTCGGGGCTGATGACTCTGGGCCGCCAGCAAG
AACGCACCCAGCCCCGCTACTTCATGCACGCCTACAACACCATCAGTGGGCACATGCTCAAAACCACCAA
GAACACTACCACCGAGCTGACTGCCCCGCCGCCCCCGCCTGCTCCCCCTGCTACCTGTCCCAGCCTTGGA
GTGGGCACCGACACCAACTATGTCAAACGTGGTTCCTGGTCCACTCTGACCCTCAGTCATGCCCATGAGG
TCTGCCAGAAGACCTCAGCCACTTTGGATAAGAGCCTGCTCAAGTCCAAATCCTGCCACCAGGGTTTGGC
CTACCATTACCTGCAGGTGCCCGGCGGAGGGGGAGAGTGGAGCACCACGCTGCTATCCCCTCGAGACATG
GATAGCACCGCTGAGGGGCCCATCCCGTGCCGGCGCATGCGCAGTGGCAGCTATATCAAGGCCATGGGCG
ATGAAGACAGTGATGAGTCTGGGGGTGGTAGCCCCAAACCTTCACCCAAGACTGCAGCGCGGCGTCAGAG
CTACCTGAGGGCTACGCAGCAGTCCCTGGGAGAGCAGAGCAACCCTCGACGGAGTTTGGACCGCTTGGAT
TCAGTGGACATGCTGCTGCCTTCCAAGTGCCCCAGCTGGGAAGACGACTACAACCCCATCAGTGACAGCC
TCAATGACTCCAGCTGTATCAGCCAGGTCCGGGAGGCAGATCTGAGCGACCAGTACGAGGCAGCCTGCGA
GTCGGCCTGCAGTGAGGCCGAGTCTACAACCGCAGAGGCACTCGACTTGCCGCTGCCCAGCTACTTCCGC
TCACGCAGCCACAGCTACCTGCGAGCCATCCAGGCAGGCTGCTCGCAAGAGGAGGACAGTGTCTCCCTGC
AGTCCCTCTCCCCACCGCCCAGCACTGGCAGCCTCAGCAACAGTCGCACGCTTCCAAGTTCATCATGCCT
AGTGGCATATAAGAAGACCCCACCACCGGTCCCTCCACGAACCACATCGAAACCGTTCATCTCAGTCACC
GTCCAGAGCAGTACTGAGTCTGCTCAGGATACCTACCTGGACAGTCAAGACCACAAGAGCGAAGTGACGA
GCCAGTCGGGCTTGAGCAACTCATCAGACAGCCTGGACAGCAGTACCCGGCCACCCAGTGTGACACGGGG
TGGAATTACCCCAGGCCCTGAAGCTCCGGAGCCACCCCCTAAGCATGCAGCTCTGAAGAGTGAACAAGGG
ACACTGACGAGCTCTGAGTCCCATTCCGAGGCCATCCCCAAAAGGAAACTGTCATCGATAGGAATACAAG
TTGACTGCATTCAGCCAGTGCCAAAAGAGGAGCCCAGTCCCGCTACCAAATTCCAGTCCATCGGGATTCA
GGTAGAGGACGACTGGCGAAGCAGTGCCCCCTCTCACAGCATGTCCTCCCGTCGGGACACTGACTCTGAT
ACCCAGGATGCCAACGACTCCAGTTGTAAGTCATCTGAGAGGAGTCTCCCAGACTGTACCTCACACCCCA
ATTCCATCAGCATTGATGCTGGCCCCCGACAGGCCCCCAAGATTGCCCAGATCAAGCGCAACCTCTCCTA
TGGAGACAACAGCGACCCTGCCCTGGAGGCGTCTTCGCTGCCCCCACCCGACCCTTGGCTGGAGACTTCC
TCCAGCTCCCCAGCAGAGCCCGCTCAGCCAGGGGCCTGCCGCAGGGATGGCTACTGGTTCCTGAAGCTCC
TTCAGGCAGAAACGGAGAGACTGGAAGGCTGGTGCTGCCAGATGGACAAGGAGACCAAAGAGAACAACCT
CTCTGAAGAAGTCTTAGGGAAAGTTCTCAGTGCTGTGGGCAGCGCCCAGCTCCTGATGTCCCAGAAATTC
CAGCAGTTCCGCGGCCTCTGTGAGCAGAACTTGAACCCTGATGCCAACCCCCGTCCGACAGCCCAGGACC
TGGCAGGGTTCTGGGACCTGCTGCAGCTGTCCATTGAGGACATCAGCATGAAGTTCGATGAGCTCTACCA
CCTCAAGGCCAACAGCTGGCAGCTGGTGGAGACCCCCGAGAAGAGGAAGGAAGAGAAGAAGCCACCCCCT
CCAGTCCCGAAGAAGCCAGCCAAATCCAAGGCGGCAGTGAGCCGCGACAAGGCCTCAGACGCGGGGGACA
AGCAGCGTCAGGAGGCCAGAAAGAGACTCCTGGCCGCCAAGCGAGCAGCGTCTGTGCGGCAGAACTCGGC
CACAGAGAGTGCGGACAGCATCGAGATTTATGTCCCCGAGGCCCAGACCAGGCTCTAA

Translation (975 aa):
MKGLGDSRPRHLSDSLDPPHEPLFAGPDRNPYLLSPTEAFAREARFPGQNTLPGDGLFPLNNQLPPPSST
FPRIHYNSHFEVPEESPFPSHAQATKINRLPANLLDQFEKQLPIHRDGFSTLQFPRGEAKARGESPGRIR
HLVHSVQRLFFTKAPSMEGTAGKVGGNGSKKGGLEDGKGRRAKSKERAKAGEPKRRSRSNISGWWSSDDN
LDGEGGAFRSGPASGLMTLGRQQERTQPRYFMHAYNTISGHMLKTTKNTTTELTAPPPPPAPPATCPSLG
VGTDTNYVKRGSWSTLTLSHAHEVCQKTSATLDKSLLKSKSCHQGLAYHYLQVPGGGGEWSTTLLSPRDM
DSTAEGPIPCRRMRSGSYIKAMGDEDSDESGGGSPKPSPKTAARRQSYLRATQQSLGEQSNPRRSLDRLD
SVDMLLPSKCPSWEDDYNPISDSLNDSSCISQVREADLSDQYEAACESACSEAESTTAEALDLPLPSYFR
SRSHSYLRAIQAGCSQEEDSVSLQSLSPPPSTGSLSNSRTLPSSSCLVAYKKTPPPVPPRTTSKPFISVT
VQSSTESAQDTYLDSQDHKSEVTSQSGLSNSSDSLDSSTRPPSVTRGGITPGPEAPEPPPKHAALKSEQG
TLTSSESHSEAIPKRKLSSIGIQVDCIQPVPKEEPSPATKFQSIGIQVEDDWRSSAPSHSMSSRRDTDSD
TQDANDSSCKSSERSLPDCTSHPNSISIDAGPRQAPKIAQIKRNLSYGDNSDPALEASSLPPPDPWLETS
SSSPAEPAQPGACRRDGYWFLKLLQAETERLEGWCCQMDKETKENNLSEEVLGKVLSAVGSAQLLMSQKF
QQFRGLCEQNLNPDANPRPTAQDLAGFWDLLQLSIEDISMKFDELYHLKANSWQLVETPEKRKEEKKPPP
PVPKKPAKSKAAVSRDKASDAGDKQRQEARKRLLAAKRAASVRQNSATESADSIEIYVPEAQTRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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