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Report for CCDS71147.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71147.1 Public Mus musculus 2 Ap5s1 23 108 98 CCDS HistoryNCBI Gene:69596Re-query CCDS DB by CCDS ID:71147.1Re-query CCDS DB by GeneID:69596See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71147.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110210.7 ENSMUSP00000105839.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110210.7Link to Ensembl Protein Viewer:ENSMUSP00000105839.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110210Re-query CCDS DB by Protein ID:ENSMUSP00000105839
Original member Current member NCBI NM_001291032.1 NP_001277961.1 Accepted alive Link to Nucleotide Sequence:NM_001291032.1Link to Protein Sequence:NP_001277961.1Re-query CCDS DB by Nucleotide ID:NM_001291032Re-query CCDS DB by Protein ID:NP_001277961Link to BLAST:NP_001277961.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277961.1 170 Q9D742 170 100% 0 0

Chromosomal Locations for CCDS 71147.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 131211298 131211473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131212447 131212736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131213170 131213216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (513 nt):
ATGGTCCACGCTTTCCTCATCCACACTCTGAGGGCCCCGAATTTGGAAGATACAGGCCTTTGCCGAGTGC
TCTATTCCTGTGTCTTTGGTGCTGAGAAATCACCCGATGATCCACGGTCACATGGTGCAGAAAGGGACAG
GCTCTTCCGCAAGGAACAGATTTTGGCAGTGGCCAGACAGGTGGAGTCACTGTGTAGGCTGCAGCAGCAA
GCGGCTGGATGTTCCTCCACAGACCTTCAGCCTCAGTTCTCAGCTGAACCTGTGTCCCTGCATGAGGCCC
CTCATGGAGCCTTCCACCTGGCAGCCGGGGACCCTTTCCAGGAGCCTCGGACAGTGCTATGGCTGGGTAT
ACTCTCCTTAGGTTTCGCCCTGGTGTTGGACACCCATGAGAACCTGCTGCTGGCTGAGCGCACGCTCCGG
CTCTTGGCTCGCCTCCTCCTTGACCACCTCCGGCTGCTGACACCAGCTGTCAGCACTGGAGCAGCATACT
GCCGAGCTCACCCTAGTCGATAG

Translation (170 aa):
MVHAFLIHTLRAPNLEDTGLCRVLYSCVFGAEKSPDDPRSHGAERDRLFRKEQILAVARQVESLCRLQQQ
AAGCSSTDLQPQFSAEPVSLHEAPHGAFHLAAGDPFQEPRTVLWLGILSLGFALVLDTHENLLLAERTLR
LLARLLLDHLRLLTPAVSTGAAYCRAHPSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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