NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS71055.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71055.1 Public Mus musculus 2 Upp2 23 108 98 CCDS HistoryNCBI Gene:76654Re-query CCDS DB by CCDS ID:71055.1Re-query CCDS DB by GeneID:76654See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71055.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071543.11 ENSMUSP00000071474.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071543.11Link to Ensembl Protein Viewer:ENSMUSP00000071474.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000071543Re-query CCDS DB by Protein ID:ENSMUSP00000071474
Original member Current member NCBI NM_001289660.1 NP_001276589.1 Accepted alive Link to Nucleotide Sequence:NM_001289660.1Link to Protein Sequence:NP_001276589.1Re-query CCDS DB by Nucleotide ID:NM_001289660Re-query CCDS DB by Protein ID:NP_001276589Link to BLAST:NP_001276589.1

Chromosomal Locations for CCDS 71055.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 58567418 58567528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58755358 58755422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58763675 58763792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58771421 58771579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58774116 58774230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58777805 58778014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58780002 58780148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58791778 58791830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (978 nt):
ATGCTCGCCCGCCGCCCCCGACCCCCGACCCTTCGGGCCGCCCGGGCTGTGGGCTGCTGCGAGCCGGGCT
GGCGGGACGCGGGGGAGGCGCGCGGCACGGGGAGCGGCCAGAGTATGGCTTCCATTTTGCCTGCTTCTAA
TAGATCCATGAGACCTGACAAGAATACATACGAGAGAAAACGGTCTGTGTATGTTAAGAATCCATACCTG
GAAGGCATGGACGAAGACATTCTCTATCACTTGGATTTAGGAACCAAAACACACAACCTACCAGCAATGT
TTGGGGATGTAAAGTTTGTCTGCGTTGGTGGGAGCCCGAACAGAATGAAGGCATTTGCACAGTTTATGCA
CAAGGAACTCCGGTTGGAGGGAGATGGAGAAGACATTGAAGACATCTGTGCGGGGACAGACAGATACTGC
ATGTTCAAAACAGGCCCCGTGCTCTCCGTCAGTCACGGGATGGGCATCCCCTCCATTTCCATTATGCTCC
ACGAACTCATCAAATTACTCCACCATGCACACTGCTGTGATGTTACCATCATCAGAATTGGAACGTCAGG
GGGAATTGGGATTGCACCAGGCTCCGTTGTAATAACAGATACAGCTGTAGACTCCTTCTTCAAGCCTCGA
TTTGAGCAGGTCATCTTGGATAACGTGGTCACCCGAAGCACTGAGCTTGACAAAGAACTGGCTAATGATC
TGTTCAACTGTAGCAGAGAAATCCCCAATGTTCCAACCCTCATCGGACACACGATGTGTACCTATGACTT
TTATGAAGGCCAAGGTCGCCTAGATGGGGCGTTATGCTCCTTTTCGAGAGAGAAAAAGCTAGACTACTTG
AAGAGAGCATACAGAGCTGGTGTCAGGAACATTGAAATGGAATCGACTGTGTTCGCAGCCATGTGTGGCC
TGTGTGGCCTGAGAGTAGTTCCTATGTCAGCAAATAGTGTCCGGCTGAAAACCTGCAAACTACTCTGA

Translation (325 aa):
MLARRPRPPTLRAARAVGCCEPGWRDAGEARGTGSGQSMASILPASNRSMRPDKNTYERKRSVYVKNPYL
EGMDEDILYHLDLGTKTHNLPAMFGDVKFVCVGGSPNRMKAFAQFMHKELRLEGDGEDIEDICAGTDRYC
MFKTGPVLSVSHGMGIPSISIMLHELIKLLHHAHCCDVTIIRIGTSGGIGIAPGSVVITDTAVDSFFKPR
FEQVILDNVVTRSTELDKELANDLFNCSREIPNVPTLIGHTMCTYDFYEGQGRLDGALCSFSREKKLDYL
KRAYRAGVRNIEMESTVFAAMCGLCGLRVVPMSANSVRLKTCKLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH