NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS70980.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70980.1 Public Mus musculus 2 Il15ra 23 108 98 CCDS HistoryNCBI Gene:16169Re-query CCDS DB by CCDS ID:70980.1Re-query CCDS DB by GeneID:16169See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70980.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000148748.7 ENSMUSP00000132058.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000148748.7Link to Ensembl Protein Viewer:ENSMUSP00000132058.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000148748Re-query CCDS DB by Protein ID:ENSMUSP00000132058
Original member NCBI NM_001271498.1 NP_001258427.1 Updated not alive Link to Nucleotide Sequence:NM_001271498.1Link to Protein Sequence:NP_001258427.1Re-query CCDS DB by Nucleotide ID:NM_001271498Re-query CCDS DB by Protein ID:NP_001258427
Current member NCBI NM_001271498.2 NP_001258427.1 Accepted alive Link to Nucleotide Sequence:NM_001271498.2Link to Protein Sequence:NP_001258427.1Re-query CCDS DB by Nucleotide ID:NM_001271498Re-query CCDS DB by Protein ID:NP_001258427Link to BLAST:NP_001258427.1

Chromosomal Locations for CCDS 70980.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 11723448 11723610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11724096 11724128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11727763 11727833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11730571 11730615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (312 nt):
ATGACCACAGAGACAGCTATTATGCCTGGCTCCAGGCTGACACCATCCCAAACAACTTCTGCAGGAACTA
CAGGGACAGGCAGTCACAAGTCCTCCCGAGCCCCATCTCTTGCAGCAACAATGACCTTGGAGCCTACAGC
CTCCACCTCCCTCAGGATAACAGAGATTTCTCCCCACAGTTCCAAAATGACGAAAGCCAGCCAAGATCTG
CGAGTACCCTGTCATCGGTTACACACAGCAGATGCTCATTGGCTCCTTAGACAGAAGTGGCCATCTCTAC
ATCGGTCCTCTTGGTTGGTGCAGGGGTTGTGA

Translation (103 aa):
MTTETAIMPGSRLTPSQTTSAGTTGTGSHKSSRAPSLAATMTLEPTASTSLRITEISPHSSKMTKASQDL
RVPCHRLHTADAHWLLRQKWPSLHRSSWLVQGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH