NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS70912.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70912.1 Public Mus musculus 19 Tesmin 23 108 98 CCDS HistoryNCBI Gene:17771Re-query CCDS DB by CCDS ID:70912.1Re-query CCDS DB by GeneID:17771See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70912.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000142193.7 ENSMUSP00000114171.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000142193.7Link to Ensembl Protein Viewer:ENSMUSP00000114171.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000142193Re-query CCDS DB by Protein ID:ENSMUSP00000114171
Original member Current member EBI ENSMUST00000127142.1 ENSMUSP00000122687.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000127142.1Link to Ensembl Protein Viewer:ENSMUSP00000122687.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000127142Re-query CCDS DB by Protein ID:ENSMUSP00000122687
Original member Current member NCBI NM_001286557.1 NP_001273486.1 Accepted alive Link to Nucleotide Sequence:NM_001286557.1Link to Protein Sequence:NP_001273486.1Re-query CCDS DB by Nucleotide ID:NM_001286557Re-query CCDS DB by Protein ID:NP_001273486Link to BLAST:NP_001273486.1
Original member Current member NCBI NM_001286558.1 NP_001273487.1 Accepted alive Link to Nucleotide Sequence:NM_001286558.1Link to Protein Sequence:NP_001273487.1Re-query CCDS DB by Nucleotide ID:NM_001286558Re-query CCDS DB by Protein ID:NP_001273487Link to BLAST:NP_001273487.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273486.1 295 Q9WTJ6-2 295 100% 0 0
NP_001273487.1 295 Q9WTJ6-2 295 100% 0 0

Chromosomal Locations for CCDS 70912.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 3392259 3392261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3393925 3394045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3395920 3395993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3396963 3397054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3402486 3402576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3404049 3404186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3404933 3405108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3406918 3407110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (888 nt):
ATGGTGATTTGTCAGCTGAAAGGAGGCGCCCAGATGCTCTGCATAGACAACTGTGGCGCGAGGGAGCTCA
AAGCGCTCCATCTGCTTCCTCAGTACGATGACCAGAGCAGTTTCCCTCAGTCAGAGCTCCCTAAGCCAAT
GACAACTTTAGTGGGAAGACTTCTGCCAGTACCAGCGAAGTTAAATCTCATCACACAGGTTGATAATGGA
GCTCTCCCATCAGCTGTCAATGGGGCTGCCTTTCCCTCTGGACCTGCTCTGCAAGGGCCACCCAAAATAA
CTCTGTCTGGGTACTGTGACTGCTTCTCCAGCGGGGACTTCTGCAACAGCTGCAGCTGCAACAACCTGCG
CCATGAGCTCGAGCGCTTCAAAGCCATAAAGGCGTGTCTTGATAGAAATCCTGAAGCTTTCCAACCAAAA
ATGGGGAAAGGCCGTCTGGGAGCTGCTAAACTTCGACACAGCAAAGGGTGCAACTGTAAGCGCTCAGGCT
GCCTGAAGAACTACTGTGAGTGCTATGAGGCCAAAATCATGTGTTCTTCCATTTGCAAATGCATTGCTTG
CAAAAACTATGAAGAAAGTCCAGAACGAAAAATGCTGATGAGCACACCCCACTACATGGAGCCTGGGGAC
TTTGAGAGCAGCCATTATTTGTCCCCAGCCAAGTTCTCAGGACCTCCAAAACTGAGAAAAAATAGGCAGG
CCTTCTCCTGTATCTCCTGGGAAGTAGTGGAGGCCACATGTGCCTGCCTGCTGGCCCAGGGTGAGGAAGC
AGAGCAGGAGCACTGTTCCCCAAGCTTGGCTGAGCAGATGATCCTGGAGGAGTTTGGAAGGTGCCTGTCG
CAGATTCTCCACATCGAGTTCAAGTCCAAGGGGCTGAAAATTGAGTAG

Translation (295 aa):
MVICQLKGGAQMLCIDNCGARELKALHLLPQYDDQSSFPQSELPKPMTTLVGRLLPVPAKLNLITQVDNG
ALPSAVNGAAFPSGPALQGPPKITLSGYCDCFSSGDFCNSCSCNNLRHELERFKAIKACLDRNPEAFQPK
MGKGRLGAAKLRHSKGCNCKRSGCLKNYCECYEAKIMCSSICKCIACKNYEESPERKMLMSTPHYMEPGD
FESSHYLSPAKFSGPPKLRKNRQAFSCISWEVVEATCACLLAQGEEAEQEHCSPSLAEQMILEEFGRCLS
QILHIEFKSKGLKIE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH