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Report for CCDS70347.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70347.1 Public Mus musculus 11 Smim5 23 108 98 CCDS HistoryNCBI Gene:66528Re-query CCDS DB by CCDS ID:70347.1Re-query CCDS DB by GeneID:66528See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 70347.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000142089.1 ENSMUSP00000138928.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000142089.1Link to Ensembl Protein Viewer:ENSMUSP00000138928.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000142089Re-query CCDS DB by Protein ID:ENSMUSP00000138928
Original member Current member EBI ENSMUST00000152171.7 ENSMUSP00000139148.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000152171.7Link to Ensembl Protein Viewer:ENSMUSP00000139148.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000152171Re-query CCDS DB by Protein ID:ENSMUSP00000139148
Original member Current member NCBI NM_183259.3 NP_899082.1 Accepted alive Link to Nucleotide Sequence:NM_183259.3Link to Protein Sequence:NP_899082.1Re-query CCDS DB by Nucleotide ID:NM_183259Re-query CCDS DB by Protein ID:NP_899082Link to BLAST:NP_899082.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_899082.1 78 Q8BT42 78 100% 0 0

Chromosomal Locations for CCDS 70347.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 115905176 115905302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115905682 115905791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (237 nt):
ATGGCAGCCACAGACTTTGTGGGGGAGATTCGCTCTGTGGGAGAGAGGCTGCTGCTGAAACTGCAACAAC
TCCCCCAGGCGGAGCCCGTGGAGCTCGTGGCTTTCTCCATCATTGTTCTTTTCACAGCTACTGTCCTGGT
GCTGGGGCTGATAGCCTGCAGCTGCTGCTGTGCTCACTGCTGCTGCTCTGAGAGCAGACAGCGGAAGATC
CCGGTGCGGCCCACAAAACCCAGATGA

Translation (78 aa):
MAATDFVGEIRSVGERLLLKLQQLPQAEPVELVAFSIIVLFTATVLVLGLIACSCCCAHCCCSESRQRKI
PVRPTKPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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