CCDS Report for Consensus CDS

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Report for CCDS70214.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
70214.1	Public	Mus musculus	11	Ctc1	23	108	98

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70214.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000161455.7	ENSMUSP00000124702.1	Accepted	alive
		NCBI	NM_001281464.1	NP_001268393.1	Accepted	alive

Chromosomal Locations for CCDS 70214.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)

Genome Browser links:

Chromosome	Start	Stop
11	69024253	69024306
11	69026074	69026352
11	69026451	69026579
11	69027254	69027486
11	69027604	69027781
11	69027864	69028064
11	69029686	69029812
11	69030484	69030598
11	69030691	69031006
11	69031100	69031189
11	69031414	69031604
11	69033183	69033271
11	69033367	69033541
11	69033959	69034036
11	69034635	69034779
11	69034884	69034948
11	69035505	69035670
11	69035767	69035893
11	69036028	69036167

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2898 nt):
ATGACACTTGGTGAATTAGCCCAAGCTGGCAGCCAGGTGTCCATCATTGTACAGATCCCTGCTCAGATGG TGTGGCACCGAGTCCTCCGGCCTGGCAGGGCCTATGTACTGACAAAATTGCAAGTAACCAAGACCCGGAT TCACCTTTCCTGTATTTGGACAACCATTCCATCTTCAACTCTGAAGCCTCTGAGACCAGGTTATGTGCAA GAGCTGGAGCTGGACTTAGAGTTCTCGAAAGCTGACCTTAAACCACCACCCCAGCCCACCAGCTCCAAAG ACAGCAGAGGGCAAGAAGGTCTTGTCCGGGCTTCCAAAGTCTTGCATTATTTGGGAACAGTCACTGCTGT GTTGCATGAGTCTGCCGGCCTCTACATTCTAGATGGGCAGCTGATTCTCTGCCTCGCATACCAGAAGATC CATGGCCTCAGGCGGGTTATTCGACCAGGGGTCTGTCTGGAGCTCCGAGATGTTCATCTCCTCCAGGCAG TGGGTGGAGCAACAACAAAACCTGTCCTGGCGCTCTGTCTCCATGGCACTGTTCGGCTTCAAGGCTTTTC TTGTCTTAAGCCTCTGACTTTGCCGTCCTCCAAAGTTTATGGTGCCTCCTTGTATGAGCAACTCGTGTGG AAATGTCAGTTAGGACTTCCCTTATACTTATGGGCTGCCAAGACCCTGGAGGATCTCATCTACAAGCTGT GTCCCCATGTGTTGAGATGTCACCAGTTCCTGAAGCAACCCTCTCCTGGGAAGCCCAGCTTGGGCCTGCA GCTCCTGGCTCCCTCCTGGGATGTTCTGATTCCACCTGGCAGCCCCATGCGGCATGCGTACAGCGAGATC CTGGAAGAACCACACAACTGCCCCCTTCAGAAATACACTCCACTGCAGACTCCCTACTCTTTCCCTACTA TGCTCGCCCTGGCAGAGGAAGGGCAGCACAGGGCTTGGGCTACTTTTGACCCAAAGGCCATGCTGCCTCT CCCAGAAGCCAGTCACCTGACCAGCTGCCAACTGAATCGCCACCTAGCCTGGTCCTGGGTCTGTCTGCCA TCCTGTGTGTTCCAGCCAGCCCAGGTTTTACTTGGGGTCCTGGTGGCTTCATCTCGTAAAGGTTGTCTGG AGCTTCGGGATCTAAGAGGTTCACTGCCTTGTATCCCCTTGACTGAGAGTTCACAGCCCCTCATTGACCC GAATCTCGTAGGCTGCCTGGTGCGGGTAGAGAAGTTCCAGTTGGTAGTAGAGAGAGAAGTCAGGAGCAGC TTCCCTTCCTGGGAGGAGATGGGCATGGCACGCTTCATCCAGAAGAAGCAGGCCAGAGTCTACGTCCAGT TCTACCTGGCTGATGCCCTGATCCTGCCCGTGCCCAGACCCACCTTTGGTTCAGAACCATCTCAGACAGC CTCCTCCTGCCCAGAGGGACCCCACCTGGGACAGAGCCGGCTGTTCTTACTGTCCCACAAGGAGGCCCTC ATGAAACGTAATTTTTGTCTCCTTCCGGGAGACAGTTCACAACCTGCAAAGCCCACCTTGAGTTTCCACG TGTCAGGAACTTGGCTTTGTGGCACACAGAGGAAGGAAGGTTCTGGATGGAGCCCACCCGAGTCTCTGGC CGTTGAGAGCAAGGATCAGAAGGTCTTCCTCATCTTTCTTGGCTCTTCAGTTCGATGGTTTCCGTTCTTG TACCCAAACCAAGTCTACCGACTCGTGGCTTCCGGCCCCTCAACACCAGTGTTCGAGACAGAGGGCTCAG CTGGCACCTCTCGACGTCCTCTGGAACTGGCTGACTGTGGATCTTGCCTCACTGTCCAAGAGGAGTGGAC CCTGGAGCTTGGGAGCTCTCAGGACATACCTAATGTACTGGAGGTCCCTAGAACACTGCCCGAGTCCTCA CTGGCCCAGCTGCTCGGTGACAACTCCCCCGATTCCTTGGTATCTTTCTCTGCTGAGATTTTGTCTCGGA TACTGTGTGAACCACCTCTGGCCCTTCGCCGGATGAAACCTGGGAATGCTGGGGCTATTAAAACAGGTGT GAAGCTAACAGTAGCTCTAGAAATGGATGACTGTGAATATCCCCCTCACCTGGACATATATATCGAAGAT CCACAGTTGCCTCCCCAAATAGGACTCCTTCCAGGAGCCCGAGTCCACTTTAGCCAGCTGGAGAAAAGGA TTTCCAGATCCAACATTGTTTACTGTTGTTTCCGGTCATCCACTTCTGTGCAGGTCCTGAGCTTCCCCCC AGAGACCAAAGCCAGTGCTCCTCTGCCCCACATCTATCTGGCTGAACTTCTCCAAGGTGACCGGCCTCCC TTCCAGGCCACTACCTCTTGCCATATTGTGTATGTCCTGAGCCTTCAGATCCTGTGGGTGTGTGCTCATT GCACCAGCATCTGCCCCCAGGGTAAGTGTAGTCGCCGGGACCCCAGTTGTCCATCTCAGAGGGCTGTAAG CCAGGCCAACATCAGGCTCCTGGTAGAAGATGGCACCGCAGAAGCGACGGTGATCTGTAGGAATCATCTT GTGGCAAGGGCACTAGGGCTGAGTCCTAGTGAGTGGTCCTCCATCCTCGAGCATGCCAGGGGGCCGGGGA GAGTGGCCTTGCAGTTTACAGGGCTAGGAGGCCAAACAGAGTCTGCAAGCAAAACCCATGAGCCCTTGAC CCTGCTCCTCCGGACACTTTGTACCAGCCCCTTTGTCCTCCGACCCGTTAAGCTTTCTTTTGCACTTGAA AGGAGACCCACTGATATTTCCCCACGAGAACCGTCCCGGCTGCAGCAGTTCCAGTGTGGAGAGCTCCCTC TGCTGACCAGAGTGAATCCCAGGCTCCGACTGGTCTGCCTTTCTCTGCAGGAGCCGGAGCTCCCCAACCC TCCACAAGCATCTGCTGCTTCGTCTTGA
Translation (965 aa):
MTLGELAQAGSQVSIIVQIPAQMVWHRVLRPGRAYVLTKLQVTKTRIHLSCIWTTIPSSTLKPLRPGYVQ ELELDLEFSKADLKPPPQPTSSKDSRGQEGLVRASKVLHYLGTVTAVLHESAGLYILDGQLILCLAYQKI HGLRRVIRPGVCLELRDVHLLQAVGGATTKPVLALCLHGTVRLQGFSCLKPLTLPSSKVYGASLYEQLVW KCQLGLPLYLWAAKTLEDLIYKLCPHVLRCHQFLKQPSPGKPSLGLQLLAPSWDVLIPPGSPMRHAYSEI LEEPHNCPLQKYTPLQTPYSFPTMLALAEEGQHRAWATFDPKAMLPLPEASHLTSCQLNRHLAWSWVCLP SCVFQPAQVLLGVLVASSRKGCLELRDLRGSLPCIPLTESSQPLIDPNLVGCLVRVEKFQLVVEREVRSS FPSWEEMGMARFIQKKQARVYVQFYLADALILPVPRPTFGSEPSQTASSCPEGPHLGQSRLFLLSHKEAL MKRNFCLLPGDSSQPAKPTLSFHVSGTWLCGTQRKEGSGWSPPESLAVESKDQKVFLIFLGSSVRWFPFL YPNQVYRLVASGPSTPVFETEGSAGTSRRPLELADCGSCLTVQEEWTLELGSSQDIPNVLEVPRTLPESS LAQLLGDNSPDSLVSFSAEILSRILCEPPLALRRMKPGNAGAIKTGVKLTVALEMDDCEYPPHLDIYIED PQLPPQIGLLPGARVHFSQLEKRISRSNIVYCCFRSSTSVQVLSFPPETKASAPLPHIYLAELLQGDRPP FQATTSCHIVYVLSLQILWVCAHCTSICPQGKCSRRDPSCPSQRAVSQANIRLLVEDGTAEATVICRNHL VARALGLSPSEWSSILEHARGPGRVALQFTGLGGQTESASKTHEPLTLLLRTLCTSPFVLRPVKLSFALE RRPTDISPREPSRLQQFQCGELPLLTRVNPRLRLVCLSLQEPELPNPPQASAASS

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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