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Report for CCDS70178.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70178.1 Public Mus musculus 11 Zfp879 23 108 98 CCDS HistoryNCBI Gene:214779Re-query CCDS DB by CCDS ID:70178.1Re-query CCDS DB by GeneID:214779See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70178.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109133.1 ENSMUSP00000104761.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109133.1Link to Ensembl Protein Viewer:ENSMUSP00000104761.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109133Re-query CCDS DB by Protein ID:ENSMUSP00000104761
Original member Current member NCBI NM_001290779.1 NP_001277708.1 Accepted alive Link to Nucleotide Sequence:NM_001290779.1Link to Protein Sequence:NP_001277708.1Re-query CCDS DB by Nucleotide ID:NM_001290779Re-query CCDS DB by Protein ID:NP_001277708Link to BLAST:NP_001277708.1

Chromosomal Locations for CCDS 70178.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 50832536 50833971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50837910 50837946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1473 nt):
ATGGTGGAAAGTGGGATGTTTCAAGGTGTGTACCTCGGATGGAAGAGCTTGTTTGAGCCCATAGTTTCCA
AAGAAGAAAATAAGAAAGTCTTGAAAAACCAGAGAGTGGATAAATTTTTTAACTTCATATTGGGAAAAAC
GTGTGTAAATGAGGAACAGTTAGAGGAGCAACCAGGCAATAAGAAAAACCCTTTCAGCGAGATGCTGCTT
TCTGTCAGAAGAGGCTGTAGACAAGAGCGAGGCTTTCCAGGGGTCGGACTCGTGAGAAATCCCGGCATAA
AGCTCCCATTTCGTAGGAAACCTGGAGTTGCCGCCGGAGGGGGAAAGCCCCACTTACAGCAGTACTCAGT
TCTGTTCAAACAACTGGGATTCAACCGAGCCCGCCAGCTTTGTAAATGCAACATCTGTGGGAAAGTCTTC
TTCCACAGTTCCTCCCTGAGCAAGCATCAGAGGACTCACACTGGAGAGAAGCTCTACAAATGTCAGGGCT
GTCGGAAAGCTTTCAGCCAACGCTCATCCCTGGCACAGCACCTGAGAGTCCATACTGGGGAAAAGCCGTA
CCTCTGTAGTGACTGTGGGAAGGCCTTCAGCTTCACCACCTCTCTCATTGGGCATCAGAGGATGCACACT
GGAGAGAGACCCTATGAATGTAAGGAATGTGGCAAGACCTTCAAAGGCAGCTCCTCCCTTCATAATCACC
AACGGATCCACACTGGAGAAAAGCCTTATAAGTGTAACGAGTGTGGGAGAGCCTTTAGCCAGTGCTCATC
TCTGATTCAGCACCATAGGATTCACACTGGGGAGAAACCATATGAATGCAGCCAGTGTGGGAAGGCCTTT
ACATCAATATCACGGCTGAGCAGACACCACCGCGTCCATACCGGAGAGAAGCCCTTTCACTGTAATGTGT
GTGGCAAAGTGTTCAGTTACCACTCGGCCTTGACCATCCATCAGAGAACTCACACTGGAGAGAAACCATA
TGCATGCAAGGAATGTGGGAAAGCCTTCAGCCAAAGCTCAGCACTTACCCAACATCAAAGAATCCACACT
GGAGAAAAGCCGTACAAGTGTGCCGAATGCGGAAAGGCCTTTTCCTGGCTCTCACGGCTTAACATCCACC
ACAGGATCCACACGGGGGAGAAACCGTATCACTGTAAAGAGTGTGGGAAAGCCTTCAGTTCCCACTCTGC
GGTCAATACGCACAGAAAGATCCACACTGGTGAGAAACCTTATAAATGCAGTGACTGTGAAAAAGCCTTC
AATCAAAGCTCGGCCCTTATTCAGCATCAGAGAATCCACACCGGAGAGAAGCCGTTTAACTGTAAAGTTT
GTGGGAAAGCCTTCCGACAGAGTTCCTCGCTTATGACACATATGAGGATCCACACAGGAGAAAGGCCGTA
CAGATGCGAAGCTTGCGGGAAAGCGTTCAGTCAGAGCTCATCTCTTGCCAACCACCAGAAGACACATTAC
TGA

Translation (490 aa):
MVESGMFQGVYLGWKSLFEPIVSKEENKKVLKNQRVDKFFNFILGKTCVNEEQLEEQPGNKKNPFSEMLL
SVRRGCRQERGFPGVGLVRNPGIKLPFRRKPGVAAGGGKPHLQQYSVLFKQLGFNRARQLCKCNICGKVF
FHSSSLSKHQRTHTGEKLYKCQGCRKAFSQRSSLAQHLRVHTGEKPYLCSDCGKAFSFTTSLIGHQRMHT
GERPYECKECGKTFKGSSSLHNHQRIHTGEKPYKCNECGRAFSQCSSLIQHHRIHTGEKPYECSQCGKAF
TSISRLSRHHRVHTGEKPFHCNVCGKVFSYHSALTIHQRTHTGEKPYACKECGKAFSQSSALTQHQRIHT
GEKPYKCAECGKAFSWLSRLNIHHRIHTGEKPYHCKECGKAFSSHSAVNTHRKIHTGEKPYKCSDCEKAF
NQSSALIQHQRIHTGEKPFNCKVCGKAFRQSSSLMTHMRIHTGERPYRCEACGKAFSQSSSLANHQKTHY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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