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Report for CCDS69979.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
69979.1 Public Mus musculus 1 Cd84 23 108 98 CCDS HistoryNCBI Gene:12523Re-query CCDS DB by CCDS ID:69979.1Re-query CCDS DB by GeneID:12523See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 69979.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000136479.7 ENSMUSP00000122951.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000136479.7Link to Ensembl Protein Viewer:ENSMUSP00000122951.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000136479Re-query CCDS DB by Protein ID:ENSMUSP00000122951
Original member NCBI NM_001289470.1 NP_001276399.1 Updated not alive Link to Nucleotide Sequence:NM_001289470.1Link to Protein Sequence:NP_001276399.1Re-query CCDS DB by Nucleotide ID:NM_001289470Re-query CCDS DB by Protein ID:NP_001276399
Current member NCBI NM_001289470.2 NP_001276399.1 Accepted alive Link to Nucleotide Sequence:NM_001289470.2Link to Protein Sequence:NP_001276399.1Re-query CCDS DB by Nucleotide ID:NM_001289470Re-query CCDS DB by Protein ID:NP_001276399Link to BLAST:NP_001276399.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276399.1 328 Q18PI6-3 328 99.3902% 0 2

Chromosomal Locations for CCDS 69979.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 171840658 171840703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171851803 171852135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171872697 171872948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171873305 171873439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171884588 171884679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171885571 171885633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171886361 171886426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (987 nt):
ATGGCCCAGCGCCATCTGTGGATCTGGTTCCTTTGCCTACAAACCTGGTCTGAAGCAGCAGGAAAAGATG
CAGACCCGGTGGTAATGAATGGGATTCTTGGGGAGTCAGTTACTTTCCTCTTAAATATTCAAGAACCAAA
GAAAATTGACAACATTGCCTGGACTTCTCAATCATCTGTTGCTTTTATAAAACCAGGAGTCAATAAAGCT
GAAGTTACCATAACCCAGGGCACTTATAAAGGACGAATAGAAATCATAGATCAGAAGTATGACCTGGTCA
TTAGAGACCTGAGGATGGAAGATGCAGGAACTTACAAAGCAGACATCAATGAAGAGAATGAGGAAACCAT
CACCAAGATCTACTACCTTCATATCTACCGTCGACTTAAAACACCAAAAATTACACAGAGTTTGATATCA
TCTTTGAACAATACCTGTAATATCACACTGACATGCTCTGTGGAAAAGGAAGAAAAGGATGTCACATATA
GCTGGAGTCCCTTTGGAGAGAAAAGCAATGTCCTTCAAATCGTCCACTCCCCCATGGACCAAAAACTGAC
CTACACATGTACAGCCCAGAACCCTGTCAGCAACAGTTCTGACTCTGTCACTGTCCAGCAGCCATGTACA
GACACTCCAAGCTTCCATCCTCGCCATGCTGTGTTGCCAGGAGGATTGGCCGTGCTCTTTCTGCTTATTC
TCATTCCGATGTTGGCATTTCTGTTCCGTTTGTATAAGAGAAGGCGAGACAGGATTGTCCTGGAAGATGA
TGTCTCAAAGAAAACAGTATATGCTGTAGTTTCAAGAAATGCTCAACCCACAGAGTCCAGAATCTATGAT
GAAATCCCTCAGTCCAAGATGCTGTCCTGTAAGAAAGATCCGGTGACCACCATTTATTCCTCAGTGCAGC
TTTCTGAGAAGATGAAGGAAACCAACATGAAGGACAGAAGTCTGCCTAAGGCTTTGGGTAATGAAATTGT
TGTCTAG

Translation (328 aa):
MAQRHLWIWFLCLQTWSEAAGKDADPVVMNGILGESVTFLLNIQEPKKIDNIAWTSQSSVAFIKPGVNKA
EVTITQGTYKGRIEIIDQKYDLVIRDLRMEDAGTYKADINEENEETITKIYYLHIYRRLKTPKITQSLIS
SLNNTCNITLTCSVEKEEKDVTYSWSPFGEKSNVLQIVHSPMDQKLTYTCTAQNPVSNSSDSVTVQQPCT
DTPSFHPRHAVLPGGLAVLFLLILIPMLAFLFRLYKRRRDRIVLEDDVSKKTVYAVVSRNAQPTESRIYD
EIPQSKMLSCKKDPVTTIYSSVQLSEKMKETNMKDRSLPKALGNEIVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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