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Report for CCDS661.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
661.1 Public Homo sapiens 1 NEGR1 24 110 108 CCDS HistoryNCBI Gene:257194Re-query CCDS DB by CCDS ID:661.1Re-query CCDS DB by GeneID:257194See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 661.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357731.10 ENSP00000350364.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000357731.10Link to Ensembl Protein Viewer:ENSP00000350364.4Re-query CCDS DB by Nucleotide ID:ENST00000357731Re-query CCDS DB by Protein ID:ENSP00000350364
Original member Current member NCBI NM_173808.3 NP_776169.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173808.3Link to Protein Sequence:NP_776169.2Re-query CCDS DB by Nucleotide ID:NM_173808Re-query CCDS DB by Protein ID:NP_776169Link to BLAST:NP_776169.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_776169.2 354 Q7Z3B1-1 354 100% 0 0

Chromosomal Locations for CCDS 661.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 71407446 71407570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 71592817 71592968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 71611026 71611146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 71698008 71698139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 71776172 71776297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 71935079 71935311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72282319 72282494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1065 nt):
ATGGACATGATGCTGTTGGTGCAGGGTGCTTGTTGCTCGAACCAGTGGCTGGCGGCGGTGCTCCTCAGCC
TG
TGCTGCCTGCTACCCTCCTGCCTCCCGGCTGGACAGAGTGTGGACTTCCCCTGGGCGGCCGTGGACAA
C
ATGATGGTCAGAAAAGGGGACACGGCGGTGCTTAGGTGTTATTTGGAAGATGGAGCTTCAAAGGGTGCC
TGG
CTGAACCGGTCAAGTATTATTTTTGCGGGAGGTGATAAGTGGTCAGTGGATCCTCGAGTTTCAATTT
CA
ACATTGAATAAAAGGGACTACAGCCTCCAGATACAGAATGTAGATGTGACAGATGATGGCCCATACAC
G
TGTTCTGTTCAGACTCAACATACACCCAGAACAATGCAGGTGCATCTAACTGTGCAAGTTCCTCCTAAG
ATA
TATGACATCTCAAATGATATGACCGTCAATGAAGGAACCAACGTCACTCTTACTTGTTTGGCCACTG
GG
AAACCAGAGCCTTCCATTTCTTGGCGACACATCTCCCCATCAGCAAAACCATTTGAAAATGGACAATA
T
TTGGACATTTATGGAATTACAAGGGACCAGGCTGGGGAATATGAATGCAGTGCGGAAAATGATGTGTCA
TTC
CCAGATGTGAGGAAAGTAAAAGTTGTTGTCAACTTTGCTCCTACTATTCAGGAAATTAAATCTGGCA
CC
GTGACCCCCGGACGCAGTGGCCTGATAAGATGTGAAGGTGCAGGTGTGCCGCCTCCAGCCTTTGAATG
G
TACAAAGGAGAGAAGAAGCTCTTCAATGGCCAACAAGGAATTATTATTCAAAATTTTAGCACAAGATCC
ATT
CTCACTGTTACCAACGTGACACAGGAGCACTTCGGCAATTATACCTGTGTGGCTGCCAACAAGCTAG
GC
ACAACCAATGCGAGCCTGCCTCTTAACCCTCCAAGTACAGCCCAGTATGGAATTACCGGGAGCGCTGA
T
GTTCTTTTCTCCTGCTGGTACCTTGTGTTGACACTGTCCTCTTTCACCAGCATATTCTACCTGAAGAAT
GCC
ATTCTACAATAA


Translation (354 aa):
MDMMLLVQGACCSNQWLAAVLLSLCCLLPSCLPAGQSVDFPWAAVDNMMVRKGDTAVLRCYLEDGASKGA
W
LNRSSIIFAGGDKWSVDPRVSISTLNKRDYSLQIQNVDVTDDGPYTCSVQTQHTPRTMQVHLTVQ
VPPK
I
YDISNDMTVNEGTNVTLTCLATGKPEPSISWRHISPS
AKPFENGQYLDIYGITRDQAGEYECSAENDVS
F
PDVRKVKVVVN
FAPTIQEIKSGTVTPGRSGLIRCEGAGVPPPAFEWYKGEKKLFNGQQGIIIQNFSTRS
I
LTVTNVTQEHFGNYTCVAANKLGTTNASLPLN
PPSTAQYGITGSADVLFSCWYLVLTLSSFTSIFYLKN
A
ILQ




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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