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Report for CCDS59637.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59637.1 Public Mus musculus 2 Gfra4 23 108 98 CCDS HistoryNCBI Gene:14588Re-query CCDS DB by CCDS ID:59637.1Re-query CCDS DB by GeneID:14588See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 13, NCBI annotation release 103, Ensembl annotation release 72

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59637.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110239.7 ENSMUSP00000105868.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110239.7Link to Ensembl Protein Viewer:ENSMUSP00000105868.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110239Re-query CCDS DB by Protein ID:ENSMUSP00000105868
Original member Current member NCBI NM_001271002.1 NP_001257931.1 Accepted alive Link to Nucleotide Sequence:NM_001271002.1Link to Protein Sequence:NP_001257931.1Re-query CCDS DB by Nucleotide ID:NM_001271002Re-query CCDS DB by Protein ID:NP_001257931Link to BLAST:NP_001257931.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001257931.1 269 Q9JJT2-4 269 100% 0 0

Chromosomal Locations for CCDS 59637.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 131040208 131040258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131040399 131040475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131041016 131041150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131041232 131041341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131041395 131041758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131042610 131042682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (810 nt):
ATGTTGAGAAGAGCACATTTGATGGATGAGAGGCCAGGTCAGGCGATTTTCCTGGGTCTGGGAAGCCAGA
GAGGGTCTGCGAGCTTTACCGACGGGAATCGCTGCGTGGACGCGGCCGAGGCGTGTACAGCAGACGAGCG
GTGCCAGCAGCTGCGCTCTGAGTACGTGGCACGATGCCTGGGCCGGGCAGCGCCCGGGGGCAGGCCGGGA
CCCGGGGGCTGCGTGCGCTCCCGCTGCCGCCGAGCCCTGCGCCGCTTCTTCGCGCGTGGGCCTCCGGCGC
TCACGCATGCGCTGCTCTTCTGCGGCTGCGAAGGCTCCGCGTGCGCCGAGCGCCGGCGCCAGACTTTCGC
GCCCGCCTGCGCGTTCTCCGGCCCGGGGTTGGTGCCGCCCTCTTGCCTGGAGCCCCTGGAGCGCTGCGAG
CGCAGCCGCCTGTGCCGGCCCCGTCTCCTTGCCTTCCAGGCCTCATGCGCTCCCGCGCCCGGCTCCCGCG
ACCGCTGCCCGGAGGAGGGGGGCCCGCGTTGTCTGCGCGTCTACGCAGGCCTCATAGGCACCGTGGTCAC
CCCCAACTACCTGGACAACGTGAGCGCGCGCGTTGCGCCCTGGTGCGGCTGTGCGGCCAGTGGAAACCGG
CGCGAAGAATGCGAAGCCTTCCGCAAGCTCTTTACAAGGAACCCCTGCTTGGATGGTGCCATACAAGCCT
TTGACAGCTTGCAGCCATCAGTTCTGCAGGACCAGACTGCTGGGTGCTGTTTCCCGCGGGTGTCCTGGCT
GTATGCACTCACTGCCCTGGCTCTCCAGGCCCTGCTCTGA

Translation (269 aa):
MLRRAHLMDERPGQAIFLGLGSQRGSASFTDGNRCVDAAEACTADERCQQLRSEYVARCLGRAAPGGRPG
PGGCVRSRCRRALRRFFARGPPALTHALLFCGCEGSACAERRRQTFAPACAFSGPGLVPPSCLEPLERCE
RSRLCRPRLLAFQASCAPAPGSRDRCPEEGGPRCLRVYAGLIGTVVTPNYLDNVSARVAPWCGCAASGNR
REECEAFRKLFTRNPCLDGAIQAFDSLQPSVLQDQTAGCCFPRVSWLYALTALALQALL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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