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Report for CCDS59572.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59572.1 Public Mus musculus 11 Cant1 23 108 98 CCDS HistoryNCBI Gene:76025Re-query CCDS DB by CCDS ID:59572.1Re-query CCDS DB by GeneID:76025See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 13, NCBI annotation release 103, Ensembl annotation release 72

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59572.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106289.8 ENSMUSP00000101896.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106289.8Link to Ensembl Protein Viewer:ENSMUSP00000101896.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106289Re-query CCDS DB by Protein ID:ENSMUSP00000101896
Original member Current member NCBI NM_001267592.1 NP_001254521.1 Accepted alive Link to Nucleotide Sequence:NM_001267592.1Link to Protein Sequence:NP_001254521.1Re-query CCDS DB by Nucleotide ID:NM_001267592Re-query CCDS DB by Protein ID:NP_001254521Link to BLAST:NP_001254521.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001254521.1 440 Q8VCF1-3 440 100% 0 0

Chromosomal Locations for CCDS 59572.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 118407724 118408094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118408681 118408884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118410080 118410190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118410853 118411489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1323 nt):
ATGCCCATCCAGCCCTTTGACCAGCGGGAATGGAATGAGCCTATGCACTCCCTCCGGATCAGTGTAGGGG
GCCTTCCTGTGCTGGCATCCATGACCAAGGCCACGGACCCTCGCTTCCGCCCCCGCTGGCGGGTGATCCT
CACGTCCTTTGTGGGTGCTGCCCTCCTCTGGCTGCTGTACTCCCACCATCAGGGCCCAGTGCCAGGCAGG
CCCCCCACCCACAATGCGCACAATTGGAGGCTCAGCCAGCAGCGCATCTCTCATTACAACGACACCTACC
CCCTCTCCCCCCCACAGAGGACTCCAGGTGGGATTCGGTACCGAATCGCAGTCATTGCTGACTTGGACAC
GGGGTCCAGGGCCCAGGAAGAAAACACTTGGTTTAGCTACCTTAAGAAAGGCTACCTGACCCTGTCGGAC
AGCGGGGACAGGGTCAGCGTGGAGTGGGATAAAGACCACGGGGTCCTAGAGTCCCACCTGGCAGAAAAGG
GGCGGGGCATGGAGCTCTCAGACCTGATTGTCTTCAATGGGAAACTCTACTCCGTGGATGACCGCACAGG
GGTCATCTACCAGATCGAAGGCACCAAAGCAGTGCCCTGGGTGATCCTTTCTGATGGCGATGGAACTGTG
GAGAAGGGTCAACTGCTGCTACTCAGCCTTGCTCTGAGCCCACCCAGTACAAGGGTCTGTATGCTGAGCA
GCAATGACTCCTGGGAACAGAATCTGATATTAGCTTCATGTGTAGCAGGTTTCAAAGCTGAATGGCTTGC
TGTGAAGGACGAACACCTGTATGTGGGCGGCCTGGGCAAGGAGTGGACCACCACGACAGGGGAGGTGATG
AACGAGAACCCTGAGTGGGTGAAGGTGGTAGGCCACAGGGGCAGTGTGGACCACGAGAACTGGGTGTCCA
GCTACAACGCCCTGAGAGCAGCCGCCGGGATCCGACCACCAGGCTACCTCATTCACGAGTCCGCCTGCTG
GAGCGACACACTGCAGCGCTGGTTCTTCCTGCCTCGTCGGGCTAGCCACGAACGCTACAGCGAGAAGGAC
GATGAACGCAAGGGCAGCAACCTCCTGCTGAGCGCAGCCCAGGACTTCAGGGACATCTCTGTGAGGCAAG
TGGGGACTCTGATCCCCACCCACGGCTTCTCATCCTTCAAATTCATCCCCAACACGGATGACCAGATCAT
CGTGGCTCTCAAGTCGGAAGAGGACAATGGCAGAATCGCCACCTATGTCATGGCCTTCACGCTGGACGGC
CGCTTCCTGCTTCCAGAGACCAAGATCGGCACTGTGAAGTACGAAGGAATAGAGTTCATCTAG

Translation (440 aa):
MPIQPFDQREWNEPMHSLRISVGGLPVLASMTKATDPRFRPRWRVILTSFVGAALLWLLYSHHQGPVPGR
PPTHNAHNWRLSQQRISHYNDTYPLSPPQRTPGGIRYRIAVIADLDTGSRAQEENTWFSYLKKGYLTLSD
SGDRVSVEWDKDHGVLESHLAEKGRGMELSDLIVFNGKLYSVDDRTGVIYQIEGTKAVPWVILSDGDGTV
EKGQLLLLSLALSPPSTRVCMLSSNDSWEQNLILASCVAGFKAEWLAVKDEHLYVGGLGKEWTTTTGEVM
NENPEWVKVVGHRGSVDHENWVSSYNALRAAAGIRPPGYLIHESACWSDTLQRWFFLPRRASHERYSEKD
DERKGSNLLLSAAQDFRDISVRQVGTLIPTHGFSSFKFIPNTDDQIIVALKSEEDNGRIATYVMAFTLDG
RFLLPETKIGTVKYEGIEFI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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