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Report for CCDS59542.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59542.1 Public Mus musculus 1 Ptprc 23 108 98 CCDS HistoryNCBI Gene:19264Re-query CCDS DB by CCDS ID:59542.1Re-query CCDS DB by GeneID:19264See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 13, NCBI annotation release 103, Ensembl annotation release 72

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59542.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000182755.7 ENSMUSP00000138275.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000182755.7Link to Ensembl Protein Viewer:ENSMUSP00000138275.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000182755Re-query CCDS DB by Protein ID:ENSMUSP00000138275
Original member NCBI NM_001268286.1 NP_001255215.1 Updated not alive Link to Nucleotide Sequence:NM_001268286.1Link to Protein Sequence:NP_001255215.1Re-query CCDS DB by Nucleotide ID:NM_001268286Re-query CCDS DB by Protein ID:NP_001255215
Current member NCBI NM_001268286.2 NP_001255215.1 Accepted alive Link to Nucleotide Sequence:NM_001268286.2Link to Protein Sequence:NP_001255215.1Re-query CCDS DB by Nucleotide ID:NM_001268286Re-query CCDS DB by Protein ID:NP_001255215Link to BLAST:NP_001255215.1

Chromosomal Locations for CCDS 59542.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 138064506 138064778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138066088 138066223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138067886 138068061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138068312 138068434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138071137 138071271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138072257 138072390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138073604 138073694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138078446 138078595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138080135 138080270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138080837 138080994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138082636 138082761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138083563 138083660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138083747 138083783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138088503 138088579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138088667 138088757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138089495 138089604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138092199 138092233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138092896 138093004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138094242 138094302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138099483 138099691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138101042 138101197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138107775 138107909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138111152 138111310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138112191 138112331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138113564 138113779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138115619 138115642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138126303 138126326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138175015 138175087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3393 nt):
ATGACCATGGGTTTGTGGCTCAAACTTCTGGCCTTTGGATTTGCCCTTCTGGACACAGAAGTCTTTGTCA
CAGGGCAAACACCTACACCCAGTGATGCTACCACAACGAAGCAAACATGTGCTGCCATGTTTGGGAACAT
TACTGTGAATTACACCTATGAATCTAGTAATCAGACTTTTAAGGCAGACCTCAAAGATGTCCAAAATGCT
AAGTGTGGAAATGAGGATTGTGAAAACGTGTTAAATAATCTAGAAGAATGCTCACAGATAAAAAACATCA
GTGTGTCTAATGACTCATGTGCTCCAGCTACAACTATAGATTTATATGTACCACCAGGGACTGACAAGTT
TTCGCTACATGACTGCACACCAAAAGAAAAGGCTAATACTTCAATTTGTTTGGAGTGGAAAACAAAAAAC
CTTGATTTCAGAAAATGCAACAGTGACAATATTTCATATGTACTCCACTGTGAGCCAGAAAATAATACAA
AATGCATTAGAAGAAATACATTCATACCTGAAAGATGTCAGTTGGACAACCTTCGTGCCCAAACAAATTA
CACATGTGTAGCAGAAATCTTATATCGCGGTGTAAAACTCGTCAAAAATGTTATAAATGTGCAGACAGAT
TTGGGGATTCCAGAAACGCCTAAGCCTAGTTGTGGGGATCCAGCTGCAAGAAAAACGTTAGTCTCTTGGC
CTGAGCCTGTATCTAAACCTGAGTCTGCATCTAAACCCCATGGATATGTTTTATGCTATAAGAACAATTC
AGAAAAATGTAAAAGTTTGCCTAATAATGTGACCAGTTTTGAGGTGGAAAGCTTGAAACCTTATAAATAC
TATGAAGTGTCCCTACTTGCCTATGTCAATGGGAAGATTCAAAGAAATGGGACTGCTGAGAAGTGCAATT
TTCACACAAAAGCAGATCGTCCGGACAAGGTCAATGGAATGAAAACCTCCCGGCCGACAGACAATAGTAT
AAATGTTACATGTGGTCCTCCTTATGAAACTAATGGCCCTAAAACCTTTTACATTTTGGTAGTCAGAAGT
GGAGGTTCTTTTGTTACAAAATACAACAAGACAAACTGTCAGTTTTATGTAGATAATCTCTACTATTCAA
CTGACTATGAGTTTCTGGTCTCTTTTCACAATGGAGTGTACGAGGGAGATTCAGTTATAAGAAATGAGTC
AACAAATTTTAATGCTAAAGCACTGATTATATTCCTGGTGTTTCTGATTATTGTGACATCAATAGCCTTG
CTTGTTGTTTTGTATAAAATCTATGATCTGCGCAAGAAAAGATCCAGCAATTTAGATGAACAACAGGAAC
TCGTTGAAAGGGATGATGAAAAGCAGCTGATGGATGTGGAGCCAATCCATTCTGACATTTTGTTGGAAAC
ATACAAAAGGAAGATTGCTGATGAGGGCAGACTGTTCCTGGCTGAATTTCAGAGCATTCCACGGGTATTC
AGCAAGTTTCCCATCAAAGATGCCCGAAAGCCCCACAATCAGAATAAAAACCGTTATGTTGACATTCTTC
CCTATGATTATAACCGTGTGGAACTCTCTGAAATAAATGGAGATGCAGGGTCCACCTACATAAATGCCAG
CTACATTGATGGCTTCAAGGAACCCAGGAAATACATTGCTGCACAAGGGCCCCGGGATGAGACAGTTGAT
GACTTCTGGAGGATGATCTGGGAGCAAAAGGCCACAGTTATTGTCATGGTCACACGATGTGAAGAAGGAA
ACAGGAACAAGTGCGCAGAATACTGGCCAAGCATGGAGGAAGGCACTCGGGCTTTCAAAGATATTGTTGT
GACAATCAATGACCACAAACGATGTCCTGATTACATCATTCAGAAGCTGAACGTTGCACATAAAAAAGAA
AAAGCAACTGGAAGAGAAGTGACTCATATCCAATTCACCAGCTGGCCAGACCATGGGGTTCCTGAAGACC
CTCACCTGCTCCTCAAACTTCGACGGAGAGTTAATGCTTTTAGCAACTTCTTCAGTGGTCCCATTGTGGT
GCACTGCAGTGCTGGTGTTGGGCGTACAGGTACCTACATTGGAATTGATGCCATGCTGGAAGGCCTGGAA
GCAGAGGGCAAAGTGGATGTCTATGGTTATGTTGTCAAGCTAAGGCGACAGAGGTGTCTGATGGTGCAAG
TGGAGGCACAGTATATCCTGATTCATCAGGCTTTAGTGGAATACAATCAGTTTGGAGAAACAGAAGTGAA
CTTGTCTGAGTTACATTCATGCCTACACAACATGAAGAAGAGAGATCCACCCAGTGACCCCTCCCCTCTG
GAGGCTGAATACCAGAGACTTCCTTCATACAGGAGTTGGAGGACACAGCACATTGGAAATCAAGAAGAAA
ATAAGAAGAAGAACAGGAATTCTAATGTTGTTCCATATGACTTTAACAGAGTGCCACTTAAGCATGAACT
GGAGATGAGCAAAGAGAGTGAGCCTGAATCAGATGAGTCTTCAGATGATGACAGTGACTCAGAAGAAACC
AGCAAATACATTAATGCATCCTTTGTGATGAGTTACTGGAAACCAGAAATGATGATTGCTGCTCAGGGGC
CACTAAAAGAAACGATCGGTGACTTTTGGCAGATGATATTCCAAAGAAAAGTCAAAGTTATTGTGATGTT
GACAGAGTTAGTGAATGGAGACCAGGAAGTCTGTGCTCAGTACTGGGGCGAAGGAAAGCAGACTTATGGA
GACATGGAAGTGGAGATGAAAGACACAAACAGAGCCTCAGCCTACACTCTCCGAACTTTTGAGCTGAGAC
ATTCCAAGAGGAAGGAGCCCAGAACTGTGTACCAGTACCAGTGTACCACATGGAAAGGGGAAGAGCTGCC
TGCAGAACCCAAAGACCTGGTGTCTATGATTCAGGACCTCAAACAGAAGCTTCCCAAGGCTTCCCCAGAA
GGGATGAAGTATCACAAGCATGCATCCATCCTCGTCCACTGCAGAGATGGATCCCAGCAGACAGGGTTGT
TCTGTGCCTTGTTCAATCTCTTGGAAAGTGCAGAAACAGAAGATGTGGTTGATGTTTTCCAAGTGGTAAA
GTCTCTACGCAAAGCACGGCCTGGGGTGGTGTGCAGCTATGAGCAATACCAGTTCCTCTATGACATCATC
GCCAGCATCTATCCCGCCCAGAATGGACAAGTCAAGAAAACAAACAGCCAAGACAAAATTGAATTTCATA
ATGAAGTGGATGGAGGCAAGCAGGATGCTAACTGTGTCCGTCCAGATGGTCCTCTGAATAAAGCCCAGGA
AGACAGCAGAGGGGTGGGAACCCCGGAGCCTACCAATAGTGCTGAGGAACCAGAACATGCTGCCAATGGT
TCTGCGAGCCCAGCTCCAACCCAGAGTTCATAG

Translation (1130 aa):
MTMGLWLKLLAFGFALLDTEVFVTGQTPTPSDATTTKQTCAAMFGNITVNYTYESSNQTFKADLKDVQNA
KCGNEDCENVLNNLEECSQIKNISVSNDSCAPATTIDLYVPPGTDKFSLHDCTPKEKANTSICLEWKTKN
LDFRKCNSDNISYVLHCEPENNTKCIRRNTFIPERCQLDNLRAQTNYTCVAEILYRGVKLVKNVINVQTD
LGIPETPKPSCGDPAARKTLVSWPEPVSKPESASKPHGYVLCYKNNSEKCKSLPNNVTSFEVESLKPYKY
YEVSLLAYVNGKIQRNGTAEKCNFHTKADRPDKVNGMKTSRPTDNSINVTCGPPYETNGPKTFYILVVRS
GGSFVTKYNKTNCQFYVDNLYYSTDYEFLVSFHNGVYEGDSVIRNESTNFNAKALIIFLVFLIIVTSIAL
LVVLYKIYDLRKKRSSNLDEQQELVERDDEKQLMDVEPIHSDILLETYKRKIADEGRLFLAEFQSIPRVF
SKFPIKDARKPHNQNKNRYVDILPYDYNRVELSEINGDAGSTYINASYIDGFKEPRKYIAAQGPRDETVD
DFWRMIWEQKATVIVMVTRCEEGNRNKCAEYWPSMEEGTRAFKDIVVTINDHKRCPDYIIQKLNVAHKKE
KATGREVTHIQFTSWPDHGVPEDPHLLLKLRRRVNAFSNFFSGPIVVHCSAGVGRTGTYIGIDAMLEGLE
AEGKVDVYGYVVKLRRQRCLMVQVEAQYILIHQALVEYNQFGETEVNLSELHSCLHNMKKRDPPSDPSPL
EAEYQRLPSYRSWRTQHIGNQEENKKKNRNSNVVPYDFNRVPLKHELEMSKESEPESDESSDDDSDSEET
SKYINASFVMSYWKPEMMIAAQGPLKETIGDFWQMIFQRKVKVIVMLTELVNGDQEVCAQYWGEGKQTYG
DMEVEMKDTNRASAYTLRTFELRHSKRKEPRTVYQYQCTTWKGEELPAEPKDLVSMIQDLKQKLPKASPE
GMKYHKHASILVHCRDGSQQTGLFCALFNLLESAETEDVVDVFQVVKSLRKARPGVVCSYEQYQFLYDII
ASIYPAQNGQVKKTNSQDKIEFHNEVDGGKQDANCVRPDGPLNKAQEDSRGVGTPEPTNSAEEPEHAANG
SASPAPTQSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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