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Report for CCDS58990.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58990.1 Public Homo sapiens 5 PWWP2A 24 110 108 CCDS HistoryNCBI Gene:114825Re-query CCDS DB by CCDS ID:58990.1Re-query CCDS DB by GeneID:114825See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58990.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000523662.1 ENSP00000428143.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000523662.1Link to Ensembl Protein Viewer:ENSP00000428143.1Re-query CCDS DB by Nucleotide ID:ENST00000523662Re-query CCDS DB by Protein ID:ENSP00000428143
Original member Current member NCBI NM_001267035.3 NP_001253964.1 Accepted alive Link to Nucleotide Sequence:NM_001267035.3Link to Protein Sequence:NP_001253964.1Re-query CCDS DB by Nucleotide ID:NM_001267035Re-query CCDS DB by Protein ID:NP_001253964Link to BLAST:NP_001253964.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001253964.1 520 Q96N64-3 520 100% 0 0

Chromosomal Locations for CCDS 58990.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 160078155 160078168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 160093101 160094065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 160118805 160119388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1563 nt):
ATGGCGGCCGTGGCTGCAGAGGCGGCAGCGACTGCAGCGTCCCCCGGGGAGGGGGGCGCCGGCGAGGCCG
AG
CCGGAGATGGAGCCCATCCCCGGCAGTGAGGCCGGCACTGACCCCCTCCCGGTCACGGCCACTGAAGC
G
TCTGTGCCGGATGGCGAGACTGACGGGCAGCAATCCGCTCCTCAGGCCGACGAGCCGCCGCTCCCGCCG
CCA
CCGCCGCCGCCGGGGGAGCTCGCCCGCAGCCCAGAGGCGGTGGGGCCGGAGCTGGAGGCTGAGGAGA
AA
CTGTCCGTTCGGGTGGCGGAGTCGGCGGCAGCCGCGCCTCAGGGAGGGCCGGAACTTCCACCTTCTCC
T
GCATCGCCGCCGGAGCAGCCCCCGGCTCCCGAGGAGCGCGAGGAGCCGCCGCTGCCTCAGCCCGTAGCC
CCG
GCGCTCGTGCCGCCGGCGGGCGGGGACTCCACGGTGTCGCAACTGATCCCGGGCTCGGAGGTGCGGG
TC
ACGCTGGACCACATCATTGAGGACGCGCTTGTCGTGTCGTTCCGCTTCGGGGAGAAGCTCTTCTCCGG
G
GTCCTCATGGATCTGTCCAAAAGGTTTGGGCCCCATGGTATCCCTGTGACAGTATTTCCCAAAAGGGAA
TAT
AAGGATAAACCAGAAGCCATGCCGCTCCAAAGTAATACATTCCAAGAAGGGACAGAAGTCAAGTGTG
AA
GCAAATGGTGCTGTTCCCGATGACCCTTCTCCTGTCCCGCATCCCGAGCTGAGCTTGGCTGAAAGCCT
G
TGGACTTCCAAACCACCACCTCTCTTCCATGAAGGAGCACCTTATCCTCCCCCTTTGTTTATCAGGGAC
ACA
TATAACCAATCAATACCTCAGCCACCTCCTCGGAAAATTAAGCGACCCAAACGAAAAATGTACAGGG
AA
GAACCCACTTCAATAATGAATGCTATTAAACTACGACCCAGGCAAGTTCTGTGTGATAAATGTAAAAA
C
AGTGTTGTTGCTGAAAAAAAGGAAATTAGAAAAGGTAGTAGTGCAACTGACTCTTCTAAATATGAAGAT
AAA
AAACGGAGAAATGAAAGTGTAACTACTGTGAACAAAAAACTGAAAACTGACCATAAAGTGGATGGGA
AA
AACCAAAATGAAAGCCAGAAAAGAAATGCTGTGGTTAAGGTTTCAAATATTGCTCACAGCAGAGGCAG
A
GTAGTAAAAGTTTCTGCTCAGGCAAATACATCAAAAGCTCAGTTAAGTACTAAAAAAGTTCTCCAGAGT
AAG
AACATGGATCATGCGAAAGCTCGGGAAGTGTTAAAAATTGCCAAAGAAAAGGCACAAAAGAAGCAAA
AT
GAAACCTCTACTTCCAAAAATGCACATTCAAAAGTCCATTTCACACGTCGATATCAGAATCCTAGCTC
A
GGTTCCCTTCCACCCCGGGTTCGTTTAAAACCACAGAGGTACAGGAATGAAGAAAATGACTCTTCTCTG
AAG
ACAGGACTTGAGAAAATGCGGAGTGGCAAGATGGCACCCAAGCCCCAGTCTCGCTGCACCTCTACCC
GC
TCAGCAGCACAAAGACATTAG


Translation (520 aa):
MAAVAAEAAATAASPGEGGAGEAEPEMEPIPGSEAGTDPLPVTATEASVPDGETDGQQSAPQADEPPLPP
P
PPPPGELARSPEAVGPELEAEEKLSVRVAESAAAAPQGGPELPPSPASPPEQPPAPEEREEPPLPQPVA
P
ALVPPAGGDSTVSQLIPGSEVRVTLDHIIEDALVVSFRFGEKLFSGVLMDLSK
RFGPHGIPVTVFPKRE
Y
KDKPEAMPLQSNTFQEGTEVKCEANGAVPDDPSPVPHPELSLAESLWTSKPPPLFHEGAPYPPPLFIRD
T
YNQSIPQPPPRKIKRPKRKMYREEPTSIMNAIKLRPRQVLCDKCKNSVVAEKKEIRKGSSATDSSKYED
K
KRRNESVTTVNKKLKTDHKVDGKNQNESQKRNAVVKVSNIAHSRGRVVKVSAQANTSKAQLSTKKVLQS
K
NMDHAKAREVLKIAKEKAQKKQNETSTSKNAHSKVHFTRRYQNPSSGSLPPRVRLKPQRYRNEENDSSL
K
TGLEKMRSGKMAPKPQSRCTSTRSA
AQRH



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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