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Report for CCDS58933.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58933.1 Public Homo sapiens 4 HPGD 24 110 108 CCDS HistoryNCBI Gene:3248Re-query CCDS DB by CCDS ID:58933.1Re-query CCDS DB by GeneID:3248See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58933.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000510901.5 ENSP00000422418.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000510901.5Link to Ensembl Protein Viewer:ENSP00000422418.1Re-query CCDS DB by Nucleotide ID:ENST00000510901Re-query CCDS DB by Protein ID:ENSP00000422418
Original member Current member EBI ENST00000541923.5 ENSP00000438017.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000541923.5Link to Ensembl Protein Viewer:ENSP00000438017.1Re-query CCDS DB by Nucleotide ID:ENST00000541923Re-query CCDS DB by Protein ID:ENSP00000438017
Original member Current member NCBI NM_001256301.1 NP_001243230.1 Accepted alive Link to Nucleotide Sequence:NM_001256301.1Link to Protein Sequence:NP_001243230.1Re-query CCDS DB by Nucleotide ID:NM_001256301Re-query CCDS DB by Protein ID:NP_001243230Link to BLAST:NP_001243230.1
Original member Current member NCBI NM_001256307.2 NP_001243236.1 Accepted alive Link to Nucleotide Sequence:NM_001256307.2Link to Protein Sequence:NP_001243236.1Re-query CCDS DB by Nucleotide ID:NM_001256307Re-query CCDS DB by Protein ID:NP_001243236Link to BLAST:NP_001243236.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243230.1 145 P15428-3 145 100% 0 0
NP_001243236.1 145 P15428-3 145 100% 0 0

Chromosomal Locations for CCDS 58933.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 174491956 174492094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 174493151 174493314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 174495548 174495624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 174508696 174508753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (438 nt):
ATGAGTAAGCAAAATGGAGGTGAAGGCGGCATCATTATCAATATGTCATCTTTAGCAGGACTCATGCCCG
TTGCACAGCAGCCGGTTTATTGTGCTTCAAAGCATGGCATAGTTGGATTCACACGCTCAGCAGCGTTGGC
TGCTAATCTTATGAACAGTGGTGTGAGACTGAATGCCATTTGTCCAGGCTTTGTTAACACAGCCATCCTT
GAATCAATTGAAAAAGAAGAAAACATGGGACAATATATAGAATATAAGGATCATATCAAGGATATGATTA
AATACTATGGAATTTTGGACCCACCATTGATTGCCAATGGATTGATAACACTCATTGAAGATGATGCTTT
AAATGGTGCTATTATGAAGATCACAACTTCTAAGGGAATTCATTTTCAAGACTATGATACAACTCCATTT
CAAGCAAAAACCCAATGA

Translation (145 aa):
MSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAIL
ESIEKEENMGQYIEYKDHIKDMIKYYGILDPPLIANGLITLIEDDALNGAIMKITTSKGIHFQDYDTTPF
QAKTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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