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Report for CCDS57424.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57424.1 Public Mus musculus 6 Nt5c3 23 108 98 CCDS HistoryNCBI Gene:107569Re-query CCDS DB by CCDS ID:57424.1Re-query CCDS DB by GeneID:107569See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57424.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101367.8 ENSMUSP00000098918.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101367.8Link to Ensembl Protein Viewer:ENSMUSP00000098918.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000101367Re-query CCDS DB by Protein ID:ENSMUSP00000098918
Original member Current member NCBI NM_001252374.1 NP_001239303.1 Accepted alive Link to Nucleotide Sequence:NM_001252374.1Link to Protein Sequence:NP_001239303.1Re-query CCDS DB by Nucleotide ID:NM_001252374Re-query CCDS DB by Protein ID:NP_001239303Link to BLAST:NP_001239303.1
Original member Current member NCBI NM_001360963.1 NP_001347892.1 Accepted alive Link to Nucleotide Sequence:NM_001360963.1Link to Protein Sequence:NP_001347892.1Re-query CCDS DB by Nucleotide ID:NM_001360963Re-query CCDS DB by Protein ID:NP_001347892Link to BLAST:NP_001347892.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239303.1 297 Q9D020-1 297 100% 0 0
NP_001347892.1 297 Q9D020-1 297 100% 0 0

Chromosomal Locations for CCDS 57424.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 56882957 56883058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56883675 56883875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56884709 56884871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56886664 56886753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56888323 56888408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56889463 56889509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56891492 56891561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56892790 56892888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56897775 56897810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (894 nt):
ATGACTAATCAGGAGTCTGCTGTCCATTTGAAAATGATGCCAGAATTTCAGAAAAGCTCAGTTCGTATCA
AGAACCCTACAAGAGTAGAAGAAATTATCTGTGGTCTCATTAAAGGAGGCGCTGCCAAACTTCAGATAAT
AACAGACTTTGACATGACTCTAAGTAGGTTTTCCTACAATGGGAAAAGATGCCCAACGTGTCATAATATC
ATTGACAACTGTAAGCTTGTTACAGATGAATGTCGAAGAAAGTTACTGCAGCTAAAGGAGCAGTATTATG
CTATTGAAGTTGATCCTGTTCTCACCGTGGAAGAGAAGTTCCCTTACATGGTAGAGTGGTATACCAAATC
TCACGGTTTGCTTATTGAACAAGGCATACCAAAAGCCAAACTTAAAGAGATTGTGGCTGACTCTGACGTT
ATGCTCAAGGAAGGATATGAGAATTTCTTCGGTAAACTTCAACAGCACGGTATCCCTGTGTTCATATTTT
CTGCTGGTATTGGTGATGTACTTGAAGAAGTTATCCGGCAGGCTGGAGTTTATCACTCAAACGTCAAAGT
AGTGTCAAACTTCATGGATTTTGATGAAAATGGAGTGCTGAAAGGATTCAAAGGAGAGTTAATCCACGTG
TTCAACAAACACGATGGTGCCCTGAAGAATACAGACTACTTCAGCCAGCTGAAAGACAACAGCAACATCA
TTCTGCTCGGGGACTCCCAAGGAGACCTAAGAATGGCCGATGGCGTAGCCAATGTTGAACACATTCTGAA
AATTGGTTATCTGAATGACAGAGTAGACGAGCTTTTAGAAAAATACATGGACTCTTATGATATTGTTTTA
GTAAAAGAAGAATCATTGGAGGTTGTCAACTCAATTTTACAGAAGACATTATAA

Translation (297 aa):
MTNQESAVHLKMMPEFQKSSVRIKNPTRVEEIICGLIKGGAAKLQIITDFDMTLSRFSYNGKRCPTCHNI
IDNCKLVTDECRRKLLQLKEQYYAIEVDPVLTVEEKFPYMVEWYTKSHGLLIEQGIPKAKLKEIVADSDV
MLKEGYENFFGKLQQHGIPVFIFSAGIGDVLEEVIRQAGVYHSNVKVVSNFMDFDENGVLKGFKGELIHV
FNKHDGALKNTDYFSQLKDNSNIILLGDSQGDLRMADGVANVEHILKIGYLNDRVDELLEKYMDSYDIVL
VKEESLEVVNSILQKTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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