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Report for CCDS57349.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57349.1 Public Mus musculus 5 Dcun1d4 23 108 98 CCDS HistoryNCBI Gene:100737Re-query CCDS DB by CCDS ID:57349.1Re-query CCDS DB by GeneID:100737See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57349.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087181.11 ENSMUSP00000084427.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087181.11Link to Ensembl Protein Viewer:ENSMUSP00000084427.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000087181Re-query CCDS DB by Protein ID:ENSMUSP00000084427
Original member NCBI NM_001190734.1 NP_001177663.1 Updated not alive Link to Nucleotide Sequence:NM_001190734.1Link to Protein Sequence:NP_001177663.1Re-query CCDS DB by Nucleotide ID:NM_001190734Re-query CCDS DB by Protein ID:NP_001177663
Current member NCBI NM_001190734.2 NP_001177663.1 Accepted alive Link to Nucleotide Sequence:NM_001190734.2Link to Protein Sequence:NP_001177663.1Re-query CCDS DB by Nucleotide ID:NM_001190734Re-query CCDS DB by Protein ID:NP_001177663Link to BLAST:NP_001177663.1

Chromosomal Locations for CCDS 57349.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 73481089 73481094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73481208 73481268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73510886 73510956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73511127 73511166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73520116 73520230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73522653 73522744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73531504 73531574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73534606 73534697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73544047 73544155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73555359 73555463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73557254 73557356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73557632 73557687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (921 nt):
ATGGAGTTTACCCAAGAGCAGCAAGCCTGTCGTCCACAACGGTCTGAGGAAATGAGACATTGGAAAGACT
TTCAGCTGAACTCTCATCTCTCAACACTGGCAAGCATTCATAAGATCTACCATACCCTTAACAAGCTGAA
TCTGACAGAAGACGTTGGCCAAGACGATCACCAAACAGGAAGCCTGCGCTCTTGCAGTTCTTCGGACTGC
TTTAGCAAAGTGATGCCACCCAGGAAAAAGAGAAGACCTGCCTCTGGAGACGACTTATCTGCAAAAAAAA
GCAGGCATGACAGCATGTATAGGAAATACGAGTCAACTAGAATAAAGACTGAAGAAGAGGCTTTCTCCAG
TAAGCGGTGCCTGGAGTGGTTTTATGAATATGCAGGAACTGAGGATGCCGTAGGTCCCGAAGGCATGGAG
AAGTTCTGTGAAGACATTGGTGTTGAACCAGAAAACGTAGTTATGCTTGTCCTAGCTTGGAAATTGGATG
CACAAAACATGGGCTATTTTACTCTACAGGAGTGGCTGAAAGGAATGACTTCCCTACAATGTGATACAAC
AGAAAAACTCAGAACTACTTTGGATTACTTAAGATCATTATTAAACGATACAACAAACTTTAAGCTCATT
TACAGATACGCGTTTGACTTTGCACGGGAAAAGGACCAGCGCAGCCTAGACATAAACACTGCCAAGTGCA
TGTTGGGACTGTTATTAGGAAAAATCTGGCCCCTTTTTCCAGTTTTTCACCAATTCTTAGAGCAATCAAA
ATACAAAGTGATAAACAAAGACCAGTGGTGCAATGTTCTGGAGTTCAGCAGAACGATTAGTCTCGACCTC
AGCAACTACGATGAAGACGGAGCATGGCCAGTTTTGTTGGACGAATTTGTGGAATGGTATAAAGACAAGC
AGATGTCCTAG

Translation (306 aa):
MEFTQEQQACRPQRSEEMRHWKDFQLNSHLSTLASIHKIYHTLNKLNLTEDVGQDDHQTGSLRSCSSSDC
FSKVMPPRKKRRPASGDDLSAKKSRHDSMYRKYESTRIKTEEEAFSSKRCLEWFYEYAGTEDAVGPEGME
KFCEDIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRTTLDYLRSLLNDTTNFKLI
YRYAFDFAREKDQRSLDINTAKCMLGLLLGKIWPLFPVFHQFLEQSKYKVINKDQWCNVLEFSRTISLDL
SNYDEDGAWPVLLDEFVEWYKDKQMS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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