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Report for CCDS57261.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57261.1 Public Mus musculus 3 Usp33 23 108 98 CCDS HistoryNCBI Gene:170822Re-query CCDS DB by CCDS ID:57261.1Re-query CCDS DB by GeneID:170822See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57261.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000117492.8 ENSMUSP00000113265.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117492.8Link to Ensembl Protein Viewer:ENSMUSP00000113265.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000117492Re-query CCDS DB by Protein ID:ENSMUSP00000113265
Original member Current member NCBI NM_001252486.1 NP_001239415.1 Accepted alive Link to Nucleotide Sequence:NM_001252486.1Link to Protein Sequence:NP_001239415.1Re-query CCDS DB by Nucleotide ID:NM_001252486Re-query CCDS DB by Protein ID:NP_001239415Link to BLAST:NP_001239415.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239415.1 901 Q8R5K2-2 901 100% 0 0

Chromosomal Locations for CCDS 57261.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 152357891 152357971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152358146 152358199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152358636 152358698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152360283 152360435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152361900 152362002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152363978 152364047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152366214 152366327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152366741 152366819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152368236 152368650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152370277 152370417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152373386 152373498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152374620 152374789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152374915 152374985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152376242 152376275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152378844 152378889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152379436 152379616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152380514 152380640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152381715 152381884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152382911 152382992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152384116 152384224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152389741 152389843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152391650 152391718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 152392209 152392366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2706 nt):
ATGACGACTTTTCGAAATCATTGTCCACATTTGGATTCAGTTGGTGAAATAACGAAAGAGGACTTGATAC
AGAAATCTCTCGGCGCTTGTCAGGACTGTAAAGTCAGAGGACCAAACCTGTGGGCGTGCCTGGAGAATAG
GTGCTCCTATGTTGGCTGCGGGGAGTCGCAAGTGGACCACAGCACCATACACTCGCAGGAGACAAAGCAT
TATCTAACTGTGAACCTCACCACTCTTCGAGTATGGTGTTATGCTTGCAGCAAAGAAGTATTTTTGGATA
GAAAATTAGGAACTCCTCCTTCATTACCTCATGTAAGACAGCCTCAACAAACACAAGAAAACAGTGTCCA
GGATTTTAAAATTCCCAGTAATCCAGCATTGAAAACCCCCATGGTTGCTGTGTCTGAAGATCTGGATATA
GAAGTGGAAGAGGAAGACGAGCTGAAGGCTAGAGGCCTGACAGGTTTGAAAAACATTGGAAATACTTGTT
ATATGAACGCGGCGCTGCAGGCTCTTTCTAACTGCCCACCTTTGACACAGTTCTTTCTTGATTGTGGAGG
ACTGGCTAGAACAGATAAGAAACCAGCAATTTGTAAAAGTTATCTCAAACTAATGACCGAGTTGTGGCAC
AAGAGCAGGCCAGGATCTGTTGTGCCGGCTAATCTGTTCCAAGGAATTAAAACTGTAAATCCAACTTTTC
GAGGTTATTCTCAGCAGGATGCCCAGGAATTCCTTCGCTGTCTAATGGACCTGCTTCATGAGGAGCTGAA
GGAGCAGGTCATGGAAATGGAGGAAGAGCCTCAAACACTAACTTCTGAGGAGACGGTGGAGGAAGAGAAG
AGCCAGTCAGATGTGGATTTTCAGTCGTGCGAGTCTTGTAGCAGCAGCGAGAAAGCAGAAAATGAGAGTG
GCTCCAAAGGCTTTCCTGAGGACAGCAATGAGACCACCATGCTCATCCAGGACGAGGATGACCTGGAGAT
GGCCAAAGACTGGCAGAAAGAGAAGGTGTGCAATAAGATCAACAAGGCAAATGCCGATGTAGAACTGGAC
AAAGACAGGGACACAGTGTGTGAAACAGTTGACCTAAACAGCCAGGAGACCGTCAAAGTGCAGATACACG
GCAGAGCCTCAGAATCTATCACTGATGTCCATCTGAATGACCTAGCTACGTCACAGATCCTTCCTTCAAA
TGAAAGTGTTAGTCCACGGTTATCAGCAAGCCCTCCTAAGCTAGGCAGTCTGTGGCCAGGACTGTCGCCT
CCACACAAGAAAGCTCAGTCTACATCTGCAAAGAGGAAAAAGCAGCATAAGAAATACAGAAGTGTCATCT
CCGACATATTCGATGGAACAGTCATTAGCTCGGTACAGTGTCTGACGTGCGATAGGGTGTCTATAACCCT
CGAGACCTTTCAGGATCTGTCCTTGCCGATTCCTGGCAAGGAGGACCTGGCTAAGCTGCACTCCTCCAGT
CACCCAACTATAGTCAAAGCAGGGTCATGTGGTGAAGCGTACGCCCCGCAGGGGTGGATAGCTTTCTTCA
TGGAGTATGTGAAGAGCTGGTTTTGGGGTCCAGTAGTTACCTTGCAAGATTGTCTTGCTGCCTTCTTCGC
CAGAGATGAACTTAAAGGTGACAACATGTACAGTTGTGAAAAATGCAAAAAGTTGAGGAATGGAGTAAAG
TTTTGTAAAGTACAGAAGTTTCCTGAGATTTTGTGTATCCACCTTAAAAGATTTCGACATGAACTGATGT
TTTCCACCAAAATTAGCACCCATGTTTCCTTCCCCCTGGAAGGCCTCGATCTTCAGCCATTTCTTGCAAA
GGACAGCCCAGCTCAGATTGTGACATATGATCTCCTGTCAGTCATCTGTCACCATGGGACTGCAAGTAGT
GGGCACTACATTGCCTACTGCCGAAACAATTTAAATAACCTGTGGTATGAGTTTGATGACCAGAGCGTCA
CTGAAGTTTCAGAGTCCACTGTACAGAATGCCGAGGCCTACGTCCTTTTCTACAGGAAGAGCAGTGAAGA
GGCACAAAAGGAGAGGCGGAGGATATCAAATTTGTTGAACATCATGGAACCTAGCCTCCTTCAGTTCTAC
ATATCTCGACAGTGGTTGAATAAATTTAAGACCTTTGCTGAACCTGGCCCTATTTCAAATAATGATTTTC
TCTGTATCCATGGAGGTATTCCTCCACGAAAAGCGAGTTATATTGAAGACTTAGTTTTGATGCTGCCTCA
GAACATTTGGGATAACCTCTATAGCAGGTATGGAGGAGGGCCTGCTGTCAACCATCTCTACATCTGCCAC
ACCTGCCAAATTGAGTTAGAGAAGATTGAAAAACGAAGAAAAACCGAATTGGAAATTTTTATTCGGCTCA
ACAGAGCATTTCAAGAGGAGGACTCCCCAGCTACTTTTTACTGTATCAGCATGCAGTGGTTTAGAGAATG
GGAGAGTTTTGTAAAGGGTAAGGATGGAGATCCCCCAGGTCCAATCGACAACACTAAAATTGCGGTTACT
AAATGTGGCAGTGTGATGCTCAAGCAAGGAGCAGACTCTGGTCAAATTTCAGAAGAAACATGGAATTTCC
TGCAGTCTATATATGGTGGGGGGCCTGAAGTTATCCTCCGACCTCCAGTTGTTCATGTTGACCCTGATGT
ACTCCAAGCAGAGGAAAAGATTGAAGTAGAAACTCGCTCTTTGTAG

Translation (901 aa):
MTTFRNHCPHLDSVGEITKEDLIQKSLGACQDCKVRGPNLWACLENRCSYVGCGESQVDHSTIHSQETKH
YLTVNLTTLRVWCYACSKEVFLDRKLGTPPSLPHVRQPQQTQENSVQDFKIPSNPALKTPMVAVSEDLDI
EVEEEDELKARGLTGLKNIGNTCYMNAALQALSNCPPLTQFFLDCGGLARTDKKPAICKSYLKLMTELWH
KSRPGSVVPANLFQGIKTVNPTFRGYSQQDAQEFLRCLMDLLHEELKEQVMEMEEEPQTLTSEETVEEEK
SQSDVDFQSCESCSSSEKAENESGSKGFPEDSNETTMLIQDEDDLEMAKDWQKEKVCNKINKANADVELD
KDRDTVCETVDLNSQETVKVQIHGRASESITDVHLNDLATSQILPSNESVSPRLSASPPKLGSLWPGLSP
PHKKAQSTSAKRKKQHKKYRSVISDIFDGTVISSVQCLTCDRVSITLETFQDLSLPIPGKEDLAKLHSSS
HPTIVKAGSCGEAYAPQGWIAFFMEYVKSWFWGPVVTLQDCLAAFFARDELKGDNMYSCEKCKKLRNGVK
FCKVQKFPEILCIHLKRFRHELMFSTKISTHVSFPLEGLDLQPFLAKDSPAQIVTYDLLSVICHHGTASS
GHYIAYCRNNLNNLWYEFDDQSVTEVSESTVQNAEAYVLFYRKSSEEAQKERRRISNLLNIMEPSLLQFY
ISRQWLNKFKTFAEPGPISNNDFLCIHGGIPPRKASYIEDLVLMLPQNIWDNLYSRYGGGPAVNHLYICH
TCQIELEKIEKRRKTELEIFIRLNRAFQEEDSPATFYCISMQWFREWESFVKGKDGDPPGPIDNTKIAVT
KCGSVMLKQGADSGQISEETWNFLQSIYGGGPEVILRPPVVHVDPDVLQAEEKIEVETRSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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