NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS57250.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57250.1 Public Mus musculus 3 St7l 23 108 98 CCDS HistoryNCBI Gene:229681Re-query CCDS DB by CCDS ID:57250.1Re-query CCDS DB by GeneID:229681See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57250.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106769.7 ENSMUSP00000102380.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106769.7Link to Ensembl Protein Viewer:ENSMUSP00000102380.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106769Re-query CCDS DB by Protein ID:ENSMUSP00000102380
Original member Current member NCBI NM_001253702.1 NP_001240631.1 Accepted alive Link to Nucleotide Sequence:NM_001253702.1Link to Protein Sequence:NP_001240631.1Re-query CCDS DB by Nucleotide ID:NM_001253702Re-query CCDS DB by Protein ID:NP_001240631Link to BLAST:NP_001240631.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001240631.1 527 Q8K4P7-2 527 100% 0 0

Chromosomal Locations for CCDS 57250.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 104865095 104865308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104868024 104868106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104870846 104871011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104873522 104873576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104874827 104874942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104882793 104882871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104889286 104889440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104891464 104891561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104892197 104892311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104894367 104894439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104895696 104895798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104919447 104919501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104922187 104922279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104926430 104926608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1584 nt):
ATGGCGGACGGAGACTACTTCGCGGAAGCCGCGCGGGCCGTGGGGTGTCCCCATGCACCTGTTCCTGGCT
TGGGCCTGGGCCCGCCGCTGGGCTGGAAAGAGCGGCTGAAGGCCGGGTTGGCGAACTCTGGGTCCACGCT
GTGGTTCCTGGCGGGGCTGGGGCTGCTTTACGCTCTGAGGGTCCCGCTGAGGCTGTGTGACAACGTGACA
GCGGTGACAGGGTTTTTAAGTTCACTGACACCCAAGTTCTATGTGGCACTTACAGGGACATCTTCTTTGA
TATCTGGACTAATATTTATATTTGAATGGTGGTACTTCCATAAGCATGGTACATCTTTTATTGAACAAGT
GTCCATAAGCCATTTGCGGCCACTGATGGGAGGAACAGAGAGTAGCATTTCAGAGCCGGGCTCTCCTGCC
AACAGCAGAGAAAGTGAAACCCTCAGACACCACCATCTATCAGAATGCAAGGTCTGGAGAAACCCTTTAA
ACCTCTTCAGAGGAGCAGAATACAGAAGATACACTTGGGTGACTGGTAAAGAGCCACTTACTTACTATGA
CATGAACTTGTCTGCCCAGGATCACCAGACCTTTTTCACCTGTGAAACAGACTTTTTACGTCCTTCAGAC
ACAGTTATGCAGAAGGCATGGAGGGAAAGAAATCCTCCAGCTCGAATCAAAGCAGCCTATCAAGCTTTAG
AGTTAAACAATGACTGTGCCACTGCCTACGTCCTACTGGCCGAAGAAGAAGCAACAACCATTGTAGATGC
TGAAAGGTTGTTTAAACAGGCACTCAGGGCAGGAGAGATAATTTATAGACGGTCACAGCAATGCCAGCAC
CAGAGCCCTCAGCATGAAGCTCAACTGAGGCGAGATACCAATGTACTTGTGTATATTAAAAGAAGATTGG
CCATGTGTGCGAGAAAATTGGGAAGAATAAGAGAAGCAGTGAAAATAATGAGAGATTTGATGAAAGAATT
TCCTCCTCTTACCATGTTGAACATCCATGAAAATCTTTTAGAATCACTTCTAGAATTGCAGGCCTATGCA
GATGTTCAGGCAGTCCTGGCAAAATATGATGATATAAGCCTTCCAAAGTCAGCGGCCATCTGCTACACAG
CAGCACTACTGAAAACAAGAACCGTCTCAGATAAATTCTCTCCAGAAACAGCCTTCAGAAAAGGGTTAAG
CACAGCAGAAATTAATGCTGTGGAAGCAATTCATAGAGCTGTGGAATTTAATCCTCATGTTCCAAAACAC
TGGAAACGAATAGAAGGTGCTCTGAATCTCCTGCAGTGTACATGGGAAGGCACTTTTAGAATGATTCCAT
ACCCATTAGAGAAAGGACATCTATTTTACCCTTATCCCAGCTGCACAGAGACTGCTGATAGAGAGCTATT
GCCTACTTTCCATCACGTCTCTGTCTATCCAAAGAAGGAGCTTCCTTTTTTCATCCACTTTACAGCAGGA
CTGTGCTCCTCTACCGCAATGCTAGCGTTTCTCACTCACCAGTTTCCTGAAGTCATGGGTGTTTTTGCTA
AAGCTGTGAGTATGATCTCCAGGACTTGTGTGGAGTATTTATAA

Translation (527 aa):
MADGDYFAEAARAVGCPHAPVPGLGLGPPLGWKERLKAGLANSGSTLWFLAGLGLLYALRVPLRLCDNVT
AVTGFLSSLTPKFYVALTGTSSLISGLIFIFEWWYFHKHGTSFIEQVSISHLRPLMGGTESSISEPGSPA
NSRESETLRHHHLSECKVWRNPLNLFRGAEYRRYTWVTGKEPLTYYDMNLSAQDHQTFFTCETDFLRPSD
TVMQKAWRERNPPARIKAAYQALELNNDCATAYVLLAEEEATTIVDAERLFKQALRAGEIIYRRSQQCQH
QSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRIREAVKIMRDLMKEFPPLTMLNIHENLLESLLELQAYA
DVQAVLAKYDDISLPKSAAICYTAALLKTRTVSDKFSPETAFRKGLSTAEINAVEAIHRAVEFNPHVPKH
WKRIEGALNLLQCTWEGTFRMIPYPLEKGHLFYPYPSCTETADRELLPTFHHVSVYPKKELPFFIHFTAG
LCSSTAMLAFLTHQFPEVMGVFAKAVSMISRTCVEYL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH