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Report for CCDS57237.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57237.1 Public Mus musculus 3 Ecm1 23 108 98 CCDS HistoryNCBI Gene:13601Re-query CCDS DB by CCDS ID:57237.1Re-query CCDS DB by GeneID:13601See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57237.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029753.12 ENSMUSP00000029753.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029753.12Link to Ensembl Protein Viewer:ENSMUSP00000029753.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000029753Re-query CCDS DB by Protein ID:ENSMUSP00000029753
Original member NCBI NM_001252653.2 NP_001239582.1 Updated not alive Link to Nucleotide Sequence:NM_001252653.2Link to Protein Sequence:NP_001239582.1Re-query CCDS DB by Nucleotide ID:NM_001252653Re-query CCDS DB by Protein ID:NP_001239582
NCBI NM_001252653.3 NP_001239582.1 Updated not alive Link to Nucleotide Sequence:NM_001252653.3Link to Protein Sequence:NP_001239582.1Re-query CCDS DB by Nucleotide ID:NM_001252653Re-query CCDS DB by Protein ID:NP_001239582
Current member NCBI NM_001252653.4 NP_001239582.1 Accepted alive Link to Nucleotide Sequence:NM_001252653.4Link to Protein Sequence:NP_001239582.1Re-query CCDS DB by Nucleotide ID:NM_001252653Re-query CCDS DB by Protein ID:NP_001239582Link to BLAST:NP_001239582.1

Chromosomal Locations for CCDS 57237.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 95734240 95734470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95734823 95734910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95735199 95735419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95735847 95736221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95736472 95736791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95737013 95737054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95737633 95737713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95737808 95737888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95738012 95738116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95738239 95738301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95739373 95739442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1677 nt):
ATGGGGACCGTATCCAGAGCAGCCTTGATCTTGGCCTGCTTGGCTCTTGCTTCTGCTGCCTCTGAGGGAG
CCTTCAAGGCTTCAGACCAGCGAGAGATGACGCCAGAGCGCCTCTTCCAGCACCTCCATGAAGTAGGTTA
TGCAGCACCCCCTTCCCCACCACAAACCCGGAGACTCCGAGTTGACCACTCTGTAACTTCTCTGCATGAC
CCTCCCCTCTTTGAGGAACAAAGAGAAGTGCAGCCCCCTTCCTCTCCAGAAGACATCCCTGTGTACGAGG
AAGACTGGCCCACTTTCCTAAACCCTAATGTAGATAAAGCTGGTCCTGCTGTCCCTCAAGAAGCCATCCC
CCTGCAGAAAGAGCAGCCCCCTCCCCAAGTCCATATTGAACAGAAGGAAAACCCGCCTGCCCAGCCTCAG
GAGGAGATTGTCCAGAAAGAGGTGAAGCCACACACCTTGGCGGGCCAGCTCCCTCCAGAGCCCCGGACTT
GGAATCCAGCCCGTCACTGCCAGCAGGGACGGAGAGGTGTCTGGGGCCACCGGCTGGATGGCTTCCCTCC
TGGACGGCCTTCTCCAGACAATCTGAAGCAGATCTGCCTTCCTGAGCGTCAGCATGTGATCTACGGCCCC
TGGAACCTGCCGCAGACTGGCTACTCTCACCTTAGTCGCCAGGGAGAGACCCTCAATGTGCTGGAGACCG
GATACTCCCGCTGCTGTCGCTGCCGCAGCGACACAAACCGCCTAGACTGTTTGAAGCTTGTGTGGGAGGA
TGCAATGACCCAATTTTGTGAGGCCGAATTCTCTGTCAAGACCCGCCCCCACCTGTGCTGCAGACTGCGT
GGGGAGGAGCGATTCTCTTGCTTCCAGAAGGAAGCTCCTCGCCCAGACTACCTGCTCCGACCCTGCCCCG
TCCACCAGAATGGCATGTCCTCAGGGCCCCAGTTGCCTTTCCCCCCGGGGTTGCCCACACCGGACAATGT
CAAAAACATCTGTCTCCTGAGACGCTTCCGCGCCGTGCCACGCAACCTCCCAGCTACTGACGCCATCCAG
AGGCAGCTGCAGGCTCTGACTCGGCTGGAGACGGAGTTCCAGCGCTGCTGCCGCCAGGGCCACAACCACA
CTTGCACATGGAAGGCCTGGGAGGGTACCCTGGATGGATACTGCGAGCGGGAGCTGGCTATAAAGACCCA
CCCCCACTCGTGCTGCCACTACCCTCCTAGTCCTGCCCGTGATGAGTGCTTCGCCCACCTAGCTCCCTAT
CCCAACTATGACCGGGATATCTTGACCCTTGACCTCAGCCGAGTCACCCCCAACCTCATGGGCCAGCTCT
GTGGAAGTGGAAGGGTCCTTAGCAAGCATAAACAGATTCCGGGGCTGATCCAGAATATGACCATCCGCTG
CTGCGAGCTTCCATATCCAGAACAGGCCTGCTGCGGCGAAGAGGAGAAACTGGCCTTCATCGAGAACCTC
TGTGGTCCCCGGAGGAATTCGTGGAAAGACCCTGCCCTCTGCTGTGACCTGTCTCCTGAAGATAAGCAAA
TCAACTGCTTCAATACCAACTACCTGAGGAACGTGGCTTTAGTGGCTGGAGACACTGGGAATGCCACTGG
CTTGGGGGAGCAGGGCCCAACTCGGGGAACAGATGCCAACCCCGCCCCTGGGTCCAAGGAAGAATGA

Translation (558 aa):
MGTVSRAALILACLALASAASEGAFKASDQREMTPERLFQHLHEVGYAAPPSPPQTRRLRVDHSVTSLHD
PPLFEEQREVQPPSSPEDIPVYEEDWPTFLNPNVDKAGPAVPQEAIPLQKEQPPPQVHIEQKENPPAQPQ
EEIVQKEVKPHTLAGQLPPEPRTWNPARHCQQGRRGVWGHRLDGFPPGRPSPDNLKQICLPERQHVIYGP
WNLPQTGYSHLSRQGETLNVLETGYSRCCRCRSDTNRLDCLKLVWEDAMTQFCEAEFSVKTRPHLCCRLR
GEERFSCFQKEAPRPDYLLRPCPVHQNGMSSGPQLPFPPGLPTPDNVKNICLLRRFRAVPRNLPATDAIQ
RQLQALTRLETEFQRCCRQGHNHTCTWKAWEGTLDGYCERELAIKTHPHSCCHYPPSPARDECFAHLAPY
PNYDRDILTLDLSRVTPNLMGQLCGSGRVLSKHKQIPGLIQNMTIRCCELPYPEQACCGEEEKLAFIENL
CGPRRNSWKDPALCCDLSPEDKQINCFNTNYLRNVALVAGDTGNATGLGEQGPTRGTDANPAPGSKEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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