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Report for CCDS57067.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57067.1 Public Mus musculus 17 Rxrb 23 108 98 CCDS HistoryNCBI Gene:20182Re-query CCDS DB by CCDS ID:57067.1Re-query CCDS DB by GeneID:20182See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57067.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000173354.8 ENSMUSP00000133661.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000173354.8Link to Ensembl Protein Viewer:ENSMUSP00000133661.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000173354Re-query CCDS DB by Protein ID:ENSMUSP00000133661
Original member Current member NCBI NM_001205215.1 NP_001192144.1 Accepted alive Link to Nucleotide Sequence:NM_001205215.1Link to Protein Sequence:NP_001192144.1Re-query CCDS DB by Nucleotide ID:NM_001205215Re-query CCDS DB by Protein ID:NP_001192144Link to BLAST:NP_001192144.1

Chromosomal Locations for CCDS 57067.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 34032931 34033044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34033555 34033711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34034022 34034201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34035654 34035826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34036325 34036454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34036625 34036757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34036861 34036964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34037167 34037272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34037384 34037531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1245 nt):
ATGCCACCCCCGCCACTGGGCTCCCCCTTCCCAGTCATCAGTTCTTCCATGGGGTCCCCTGGTCTGCCCC
CTCCGGCTCCCCCAGGATTCTCCGGGCCTGTCAGCAGCCCTCAGATCAACTCCACAGTGTCGCTCCCTGG
GGGTGGGTCTGGCCCCCCTGAAGATGTGAAGCCACCGGTCTTAGGGGTCCGGGGCCTGCACTGTCCACCC
CCTCCAGGTGGTCCTGGGGCTGGCAAACGGCTCTGTGCAATCTGCGGGGACCGAAGCTCAGGCAAGCACT
ATGGGGTTTACAGCTGCGAGGGCTGCAAGGGTTTCTTCAAGCGCACCATTCGGAAGGACCTGACCTACTC
GTGTCGTGATAACAAAGACTGTACAGTGGACAAGCGCCAGCGGAATCGCTGTCAGTACTGTCGCTATCAG
AAGTGCCTGGCCACTGGCATGAAAAGGGAGGCGGTTCAGGAGGAGCGTCAACGGGGGAAGGACAAAGACG
GGGATGGAGATGGGGCTGGGGGAGCCCCTGAGGAGATGCCTGTGGACAGGATCCTGGAGGCAGAGCTTGC
TGTGGAGCAGAAGAGTGACCAAGGCGTTGAGGGTCCTGGGGCCACCGGGGGTGGTGGCAGCAGCCCAAAT
GACCCAGTGACTAACATCTGCCAGGCAGCTGACAAACAGCTGTTCACACTCGTTGAGTGGGCAAAGAGGA
TCCCGCACTTCTCCTCCCTACCTCTGGACGATCAGGTCATACTGCTGCGGGCAGGCTGGAACGAGCTCCT
CATTGCGTCCTTCTCCCATCGGTCCATTGATGTCCGAGATGGCATCCTCCTGGCCACGGGTCTTCATGTG
CACAGAAACTCAGCCCATTCCGCAGGCGTGGGAGCCATCTTTGATCGGTCCCTCTCCAGGGTGCTGACAG
AGCTAGTGTCCAAAATGCGTGACATGAGGATGGACAAGACAGAGCTTGGCTGCCTGCGGGCAATCATACT
GTTTAATCCAGACGCCAAGGGCCTCTCCAACCCTGGAGAGGTGGAGATCCTTCGGGAGAAGGTGTACGCC
TCACTGGAGACCTATTGCAAGCAGAAGTACCCTGAGCAGCAGGGCCGGTTTGCCAAGCTGCTGTTACGTC
TTCCTGCCCTCCGCTCCATCGGCCTCAAGTGTCTGGAGCACCTGTTCTTCTTCAAGCTCATTGGCGACAC
CCCCATTGACACCTTCCTCATGGAGATGCTTGAGGCTCCCCACCAGCTAGCCTGA

Translation (414 aa):
MPPPPLGSPFPVISSSMGSPGLPPPAPPGFSGPVSSPQINSTVSLPGGGSGPPEDVKPPVLGVRGLHCPP
PPGGPGAGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ
KCLATGMKREAVQEERQRGKDKDGDGDGAGGAPEEMPVDRILEAELAVEQKSDQGVEGPGATGGGGSSPN
DPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHV
HRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYA
SLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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