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Report for CCDS56947.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56947.1 Public Mus musculus 14 A630023A22Rik 23 108 98 CCDS HistoryNCBI Gene:105518Re-query CCDS DB by CCDS ID:56947.1Re-query CCDS DB by GeneID:105518See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56947.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000178958.2 ENSMUSP00000137109.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178958.2Link to Ensembl Protein Viewer:ENSMUSP00000137109.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178958Re-query CCDS DB by Protein ID:ENSMUSP00000137109
Original member Current member NCBI NM_001251843.1 NP_001238772.1 Accepted alive Link to Nucleotide Sequence:NM_001251843.1Link to Protein Sequence:NP_001238772.1Re-query CCDS DB by Nucleotide ID:NM_001251843Re-query CCDS DB by Protein ID:NP_001238772Link to BLAST:NP_001238772.1

Chromosomal Locations for CCDS 56947.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 34051547 34051583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34052470 34052776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34053577 34053772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34054870 34054929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (600 nt):
ATGTGGATCCAGTTGTCCGCCACACTGCCTGATCTGAAGACAAAGGAGATATATGTCAAGCCAGGACCAT
GGTATCGGAGGCTCCCACCTTTAAAAGTGGGAGGAAGCAACAGGAGCAGGAGCAGAAAAAGTGCCGAACA
AGGCATGGAGGGACTGTGGCTCATCATGTTGACTGTCCCTGGGACTTTGCTAGCTCCTGGGATGCTGTGG
AAGGTCACACGGAATCTTTCTCTACCACCTCTGCCTGAACTTAGGGCCTCTTCACAGCATCAGTGGGCAT
GGACTTCCTTGGCGGAGGCCCAGAGCTTGAGGAGACAGTGTCTGCAGTGCGGAGCTTCAGACCGTGGGGC
CCTTTATGACATCACACCACCAGGCATGGTGTCATTTATGCTGTTCTCTGGCCGGAGCTTCACCAGGTTG
TCCAGTTTCAGAGAGGAGTGTGGGTGGGCTCCCCAGTGCCTTCACCCTTCTTCATCAAAGAACCTGGAAT
GGCAGAGGGGGAGGCGGTGTGGAGAGATGGTGCCACACAACTGCATTCAAAAGGAATCCAGGCCACTCAG
ACACTCCTACATACACCAGCCACACCAGATGCTGACCTGA

Translation (199 aa):
MWIQLSATLPDLKTKEIYVKPGPWYRRLPPLKVGGSNRSRSRKSAEQGMEGLWLIMLTVPGTLLAPGMLW
KVTRNLSLPPLPELRASSQHQWAWTSLAEAQSLRRQCLQCGASDRGALYDITPPGMVSFMLFSGRSFTRL
SSFREECGWAPQCLHPSSSKNLEWQRGRRCGEMVPHNCIQKESRPLRHSYIHQPHQMLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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