CCDS Report for Consensus CDS

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Report for CCDS56883.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
56883.1	Public	Mus musculus	13	Hk3	23	108	98

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56883.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000153665.7	ENSMUSP00000115227.1	Accepted	alive
		NCBI	NM_001206392.1	NP_001193321.1	Accepted	alive

Chromosomal Locations for CCDS 56883.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)

Genome Browser links:

Chromosome	Start	Stop
13	55006171	55006315
13	55006403	55006636
13	55006806	55006961
13	55007072	55007255
13	55008675	55008774
13	55008953	55009048
13	55010697	55010816
13	55010896	55011035
13	55011148	55011443
13	55012027	55012260
13	55012442	55012597
13	55013228	55013411
13	55013487	55013586
13	55014232	55014327
13	55014427	55014546
13	55014626	55014780
13	55014973	55015060

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2604 nt):
ATGGAGCAGGCACTGAAGGGACAGGACAGTCCCGCTCCTTCTGTCCGGATGCTGCCCACATACGTGAGGT CCACACCACACGGCACCGAGCAAGGGGATTTCCTGGTGCTGGAGCTGGGGGCCACAGGAGCATCACTACG TGTGTTGTGGGTAACACTGACAGGCACCAAAGAATGCCGGGTGGAGCCCAGGAGCCGGGAGTTTGTGATT CCTCAAGAGGTGATCCTAGGTGCTGGCCAGCAGCTCTTTGACTTTGCTGCCCGATGCCTCTCTGAATTCC TGGATGCATACCCCGTGGAGAATCAGGGTCTGAAGCTTGGGTTCAATTTCTCTTTTCCTTGTCACCAGAC AGGCTTGGACAGGAGCACCCTCATTTCCTGGACAAAAGGTTTTAGGTGCAGCGGCGTGGAAGGCCAGGAT GTGGTCCAGTTGCTAAGAGATGCCATTCAGAGGCAGGGGACCTACAGGATTGATGTGGTAGCCATGGTGA ATGACACGGTGGGCACCATGATGGGCTGTGAGCTGGGCACCAGGCCGTGTGAAGTCGGGCTGATTGTAGA CACCGGTACCAACGCGTGCTACATGGAGGAGGCGCGGCACGTGGCCGCTCTGGATGAGGACCGCGGCCGC ACCTGTGTCAGCATCGAGTGGGGCTCCTTCTATGACGAAGATGCTCTAGGGCCAGTACTGACCACCTTCG ACTCTGCCCTGGACCGCGAGTCCCTGACTCCTGGTGCTCAAAGGTTTGAGAAGATGATTGGAGGCCTTTA CCTGGGTGAGCTGGTGAGGCTGGTTCTGGTCCACTTGACCCAGCACGGGGTCCTCTTTGATGGCTGCGCC TCTCCTGCGTTGCTGAGTCAAGGCTGTATCCTCCTGGACCACGTGGCTGAGATGGAGGACACCGCCACTG GGACAGCCCGCGTCCACACCATCCTGCAGGACTTGGGTCTGAGCCCTCGGGCCTCAGATGCTGAACTGGT GCAATATGTGTGCGTGGCTGTGTGCACACGGGCTGCCCAGCTCTGTGCGGCTGCCCTGGCTGCAGTCCTC TCCCGCCTCCAGCACAGCAGGGAGCAGCAGACATTGCAAGTGGCTGTGGCCACTGGAGGGCGAGTGTTTG AACGACACCCCAGGTTCCTCCGAATCCTAAAGGAGACGGTAACACTCCTGGCCCCAAACTGTGATGTCTC CTTCATCCCCTCTGTGGATGGTGGTGGCCGGGGTGTGGCAATGGTGACAGCTGTGGCTGCCCGCCTGGCT GCTCACAGGCGCATCCTGGAAGAGACCCTGGCACCATTTCAGCTGACCTTGGAGCAGATGACAGTGGTGC AGGCACAAATGCGGGAAGCCATGATCAGGGGGCTTCAAGGAGAGGCCTCCTCCCTCCGCATGCTGCCCAC TTACGTCCGAGCGACGCCCGACGGCAGCGAGCGAGGTGATTTCCTGGCCTTGGACCTAGGGGGCACCAAC TTCCGGGTCCTGTTGGTACGAGTGGCGGAGGGCAGTGTGCAGATCATCAACCAGGTCTACTCCATTCCTG AGTGTAGAGCCCAGGGCTCTGGACAGAAGCTCTTTGACCATATTGTGGACTGCATCGTGGACTTCCAGAA GAGGCAGGGCCTTAGTGGACAGAGCCTACCCCTGGGTTTCACCTTCTCTTTCCCATGCAAGCAGCTTGGC CTGGACCAGGGCATCCTCCTGAATTGGACTAAGGGGTTCAATGCATCAGGCTGTGAGGGCCAGGATGTTG TGTATCTATTACGGGAAGCCATTAGGCGCAGACAGGCAGTGGAGCTGAATGTGGTTGCCATTGTCAATGA CACGGTGGGGACCATGATGTCCTGTGGCTATGATGATCCCCGTTGTGAGATGGGCCTCATTGTCGGAACC GGCACCAACGCCTGTTACATGGAAGAGCTCCGCAATGTGGCAAGTGTGCCTGGGGACTCGGGCCTCATGT GCATCAACATGGAGTGGGGTGCCTTTGGGGATGATGGCTCACTGGGCACACTCAGCACCCGCTTTGACAC CAGTGTGGACCAGGCATCCATCAATCCAGGCAAACAGAGGTTTGAGAAAATGATCAGCGGTATGTACTTG GGGGAGATCGTCCGCCATATCCTCCTGCACTTAACCAATCTCGGAGTTCTCTTCCGAGGCCAGAAGACTC AATGCCTTCAGGCCAGGGACATCTTCAAGACTAAGTTCCTCTCTGAGATCGAAAGTGATAGCCTGGCCCT GCGTCAGGTCCGAGCCATCCTGGAAGATCTGGGGCTGACTCTGACATCTGATGACGCCTTGATGGTCCTG GAAGTGTGCCAGGCTGTGTCTCGCAGGGCTGCCCAACTCTGTGGGGCAGGTGTGGCTGCCGTGGTGGAGA AGATTCGGGAGAACCGGGGCCTGCAGGAGCTGACAGTGTCTGTGGGAGTAGATGGGACACTCTACAAGCT ACATCCTCACTTCTCCAAGCTGGTGTCGGCAACAGTCCGGAAGCTAGCCCCTCAGTGCACCGTCACCTTT TTGCAGTCGGAGGATGGGTCTGGCAAAGGCGCAGCTTTGGTTACTGCTGTTGCTTGTCGCCTTACCCAGA TGGCCCACGTCTGA
Translation (867 aa):
MEQALKGQDSPAPSVRMLPTYVRSTPHGTEQGDFLVLELGATGASLRVLWVTLTGTKECRVEPRSREFVI PQEVILGAGQQLFDFAARCLSEFLDAYPVENQGLKLGFNFSFPCHQTGLDRSTLISWTKGFRCSGVEGQD VVQLLRDAIQRQGTYRIDVVAMVNDTVGTMMGCELGTRPCEVGLIVDTGTNACYMEEARHVAALDEDRGR TCVSIEWGSFYDEDALGPVLTTFDSALDRESLTPGAQRFEKMIGGLYLGELVRLVLVHLTQHGVLFDGCA SPALLSQGCILLDHVAEMEDTATGTARVHTILQDLGLSPRASDAELVQYVCVAVCTRAAQLCAAALAAVL SRLQHSREQQTLQVAVATGGRVFERHPRFLRILKETVTLLAPNCDVSFIPSVDGGGRGVAMVTAVAARLA AHRRILEETLAPFQLTLEQMTVVQAQMREAMIRGLQGEASSLRMLPTYVRATPDGSERGDFLALDLGGTN FRVLLVRVAEGSVQIINQVYSIPECRAQGSGQKLFDHIVDCIVDFQKRQGLSGQSLPLGFTFSFPCKQLG LDQGILLNWTKGFNASGCEGQDVVYLLREAIRRRQAVELNVVAIVNDTVGTMMSCGYDDPRCEMGLIVGT GTNACYMEELRNVASVPGDSGLMCINMEWGAFGDDGSLGTLSTRFDTSVDQASINPGKQRFEKMISGMYL GEIVRHILLHLTNLGVLFRGQKTQCLQARDIFKTKFLSEIESDSLALRQVRAILEDLGLTLTSDDALMVL EVCQAVSRRAAQLCGAGVAAVVEKIRENRGLQELTVSVGVDGTLYKLHPHFSKLVSATVRKLAPQCTVTF LQSEDGSGKGAALVTAVACRLTQMAHV

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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