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Report for CCDS56846.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56846.1 Public Mus musculus 12 Dpf3 23 108 98 CCDS HistoryNCBI Gene:70127Re-query CCDS DB by CCDS ID:56846.1Re-query CCDS DB by GeneID:70127See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 56846.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000177959.7 ENSMUSP00000137477.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177959.7Link to Ensembl Protein Viewer:ENSMUSP00000137477.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177959Re-query CCDS DB by Protein ID:ENSMUSP00000137477
Original member NCBI NM_058212.2 NP_478119.1 Updated not alive Link to Nucleotide Sequence:NM_058212.2Link to Protein Sequence:NP_478119.1Re-query CCDS DB by Nucleotide ID:NM_058212Re-query CCDS DB by Protein ID:NP_478119
Current member NCBI NM_058212.3 NP_478119.1 Accepted alive Link to Nucleotide Sequence:NM_058212.3Link to Protein Sequence:NP_478119.1Re-query CCDS DB by Nucleotide ID:NM_058212Re-query CCDS DB by Protein ID:NP_478119Link to BLAST:NP_478119.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_478119.1 356 P58269-3 356 100% 0 0

Chromosomal Locations for CCDS 56846.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 83269425 83269627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83272339 83272467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83294362 83294499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83315392 83315470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83324938 83325033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83331863 83331987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83350788 83350895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83370504 83370664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83487677 83487708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1071 nt):
ATGGCGACTGTCATTCACAACCCCCTGAAAGCGCTTGGGGACCAGTTCTACAAGGAAGCCATTGAGCACT
GCCGGAGCTACAACTCGAGGCTGTGCGCAGAGCGGAGCGTGCGTCTCCCCTTCCTGGACTCGCAGACTGG
GGTGGCTCAGAACAACTGCTACATCTGGATGGAGAAGAGGCACCGCGGCCCAGGCCTCGCTCCGGGCCAG
TTGTACACATACCCTGCCCGCTGCTGGCGCAAGAAGCGACGATTGCACCCACCAGAGGACCCAAAACTAC
GACTCCTGGAAATCAAACCCGTAGAACTGCCCCTGAAGAAAGATGGATTTACCTCTGAGAGTACCACACT
GGAAGCCTTGCTTCGCGGCGAGGGAGTAGAGAAGAAGGTGGATGCCAGAGAAGAGGAAAGCATCCAGGAG
ATACAGAGGGTTTTGGAAAATGATGAAAACGTAGAAGAAGGGAATGAAGAGGAGGATTTGGAAGAAGATG
TTCCCAAGCGCAAGAACAGGACCAGAGGACGGGCTCGCGGCTCTGCAGGCGGAAGGAGGAGGCATGATGC
CGCCTCTCAGGAAGACCACGACAAACCCTACGTCTGCGACATCTGTGGCAAGCGCTACAAGAACCGGCCA
GGACTCAGCTACCACTACGCTCATACTCACCTGGCCAGCGAGGAGGGAGACGAAGCCCAAGACCAGGAGA
CCCGATCCCCACCCAACCACAGAAATGAGAACCACAGACCCCAGAAAGGACCAGACGGGACAGTCATTCC
TAATAACTACTGTGACTTCTGCTTGGGGGGCTCCAACATGAACAAGAAGAGTGGGAGGCCTGAAGAGCTG
GTGTCCTGTGCAGACTGTGGACGCTCTGCTCATTTGGGAGGAGAAGGCAGGAAGGAGAAGGAGGCAGCGG
CCGCAGCACGTACCACGGAGGACTTATTCGGTTCCACGTCAGAAAGTGACACCTCAACTTTCTACGGCTT
TGATGAGGACGATTTGGAAGAGCCTCGCTCCTGTCGAGGACGCCGCAGTGGCCGGGGTTCACCCACAGCA
GATAAAAAGGGCAGCTGCTGA

Translation (356 aa):
MATVIHNPLKALGDQFYKEAIEHCRSYNSRLCAERSVRLPFLDSQTGVAQNNCYIWMEKRHRGPGLAPGQ
LYTYPARCWRKKRRLHPPEDPKLRLLEIKPVELPLKKDGFTSESTTLEALLRGEGVEKKVDAREEESIQE
IQRVLENDENVEEGNEEEDLEEDVPKRKNRTRGRARGSAGGRRRHDAASQEDHDKPYVCDICGKRYKNRP
GLSYHYAHTHLASEEGDEAQDQETRSPPNHRNENHRPQKGPDGTVIPNNYCDFCLGGSNMNKKSGRPEEL
VSCADCGRSAHLGGEGRKEKEAAAAARTTEDLFGSTSESDTSTFYGFDEDDLEEPRSCRGRRSGRGSPTA
DKKGSC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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