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Report for CCDS56840.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56840.1 Public Mus musculus 12 Mia2 23 108 98 CCDS HistoryNCBI Gene:338320Re-query CCDS DB by CCDS ID:56840.1Re-query CCDS DB by GeneID:338320See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56840.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000176892.7 ENSMUSP00000135245.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000176892.7Link to Ensembl Protein Viewer:ENSMUSP00000135245.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000176892Re-query CCDS DB by Protein ID:ENSMUSP00000135245
Original member Current member NCBI NM_001165254.3 NP_001158726.1 Accepted alive Link to Nucleotide Sequence:NM_001165254.3Link to Protein Sequence:NP_001158726.1Re-query CCDS DB by Nucleotide ID:NM_001165254Re-query CCDS DB by Protein ID:NP_001158726Link to BLAST:NP_001158726.1

Chromosomal Locations for CCDS 56840.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 59129870 59129896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59136064 59136195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59137581 59137602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59137698 59137786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59146847 59146957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59147852 59147923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59149464 59149568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59154356 59154478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59158253 59158367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59159591 59159637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59160176 59160266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59162881 59163019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59168934 59169035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59170258 59170318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59170957 59170992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59172525 59172592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59174106 59174188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59176331 59176459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59179850 59180008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59184187 59184303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59185729 59185787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59188311 59188545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59189636 59189799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2286 nt):
ATGGAATTGGAAGGTCTGGGTGAGGAGGTTGTGGCAGCATTGCCTGAAGATATGAGAGCAGACTTTAATC
CCAGTGGTTTTTCGTTGGAATTGGCAGTATGTGTGCTTTCCGTTGGACTGCTTGCCGTGGTCTTGTTTCT
GTGGCGAGGCTTCCGATCAATTCGAAGCCGATTTTATGTGGGGAGAGAAAAGAAACTTGCTCTTGAGCTT
TCTGCACTAATTGAAGAAAAATGTAAACTGCTTGACAAAGTCAGCATTGTTCAAAAGGAGGCCACCTATG
AAAATCTGGAACAATCCAAATCTAAACTTGAAGATGAAATACTACTCCTAGAGGAAAAGCTGGAAGAAGA
GCGAGCTAAACATTCTGAACAAGACGAGCTGATGGCTGATATTTCAAAAAGGATACAGTCCCTAGAAGAT
GAATCAAAATCTCTCAAATCGCAAGTAGCTGAAGCCAAAACAACCTTTAGAATATTTGAAATCAATGAAG
AGCGACTCAAGGGAGCAATAAAAGATGCCTTGAATGAAAATTCTCAGCTTCAGGAAAGCCAGAAACAGCT
TTTACAGGAAACTGAAATGATGAAAGAACAAGTGAATGATCTCGATAAACAGAAAGTGGCATTGGAAGAG
TCCAGAGCACAGGCGGAACAAGCTCTGAGTGAGAAGGAGAGTCAGATTGAGACTCTGGTCACGAGCCTGC
TAAAGATGAAGGATTGGGCTGCTGTGCTTGGAGAAGCAGATGATGGGAATCTGGACTTGGACATGAAGAG
TGGCCTAGAAAACACTGCTGCCTTAGATAATCAGCCAAAGGGCGCTTTGAAGAAGCTGATTTATGCAGCT
AAGTTAAATGCTTCTTTAAAAGCCTTGGAAGGAGAACGAAATCAAGTTTACACTCAGTTATCTGAAGTGG
ATCAAGTAAAAGAAGACCTTACAGAGCATATCAAAAGTCTTGAGTCTAAACAAGCATCTTTGCAGTCAGA
AAAGACAGAGTTTGAAAGTGAGAGCCAGAAACTTCAGCAGAAACTGAAAGTGATAACCGAGCTGTACCAA
GAAAATGAAATGAAACTTCACAGGAAATTAACAGTAGAAGAAAATTACCGATTAGAGAAAGAAGAAAAAC
TTTCCAAAGTAGATGAGAAAATCAGCCATGCGACCGAGGAGCTGGAGACCTGCAGGCAGCGTGCCAAGGA
TCTTGAAGAAGAGCTGGAGAGAACAATTCATTCTTACCAGGGGCAGGTTATTTCTCATGAAAAAAAAGCA
CATGATAATTGGCTGGCAGCTCGGACTCTTGAAAGAAATCTCAATGATTTAAGAAAAGAAAATGCCCACA
ACAGACAAAAATTAACTGAAACAGAGTTTAAATTTGAACTTTTAGAAAAAGATCCTTATGCACTTGATGT
TCCAAACACAGCATTTGGCAGAGAGCACTCCCCATATGGTCCCTCACCATTGGGCCGACCTCCATCTGAA
ACGAGAGCTTTTCTCTCTCCTCCAACTTTGTTGGAGGGTCCACTAAGACTCTCACCTTTGCTTCCAGGGG
GAGGAGGAAGAGGCTCACGAGGCCCTGAGAACCTTCTGGACCATCAGATGAACACTGAAAGAGGAGAGTC
AAGCTATGACAGATTATCTGATGCTCCCAGAGCACCTTCCGACAGGTCCCTGTCACCTCCGTGGGAACAA
GATCGAAGGATGACAGCCCATCCGCCACCAGGCCAACCATATTCTGATCCAGCTCTACAAAGGCAAGATC
GGTTTTATCCTAATTCTGGTAGACTCTCTGGACCAGCAGAACTCAGAAGTTATAATATGCCCTCTTTGGA
TAAAGTGGATGGGCCAGTACCCTCAGAAATGGAGTCCAGTGGAAACGGTACCAAAGATAATCTTGGTAAC
TCTAATGTGCCTGATTCTCCTATCCCTGCTGAATGCGAAGCAGCTGGCCGTGGCTTCTTCCCTCCACCCT
TTCCTCCAGTCAGAGACCCATTGTTTCCAGTGGATCCAAGGAGCCAGTTCATGAGAAGGGGCCCCTCTTT
CCCCCCACCTCCTCCAGGAAGCATCTATGCAGCTCCTCGAGATTATTTTCCACCAAGGGACTTCCCTGGC
CCACCACTTCCTCCGTTCCCAGGGAGAACTGTGTACGCACCGAGGGGCTTTCCACCTTACCTTCCCCCCA
GAGCTGGGTTCTTCCCCCCACCCCCACATCCTGAAAGTAGAAGTGAGCTCCCCCCAGACTTGATTCCGCC
TTCAAAAGAGCCTGCAGCTGACCCTCCAGAAACACAGGAGGCCTGA

Translation (761 aa):
MELEGLGEEVVAALPEDMRADFNPSGFSLELAVCVLSVGLLAVVLFLWRGFRSIRSRFYVGREKKLALEL
SALIEEKCKLLDKVSIVQKEATYENLEQSKSKLEDEILLLEEKLEEERAKHSEQDELMADISKRIQSLED
ESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQLLQETEMMKEQVNDLDKQKVALEE
SRAQAEQALSEKESQIETLVTSLLKMKDWAAVLGEADDGNLDLDMKSGLENTAALDNQPKGALKKLIYAA
KLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITELYQ
ENEMKLHRKLTVEENYRLEKEEKLSKVDEKISHATEELETCRQRAKDLEEELERTIHSYQGQVISHEKKA
HDNWLAARTLERNLNDLRKENAHNRQKLTETEFKFELLEKDPYALDVPNTAFGREHSPYGPSPLGRPPSE
TRAFLSPPTLLEGPLRLSPLLPGGGGRGSRGPENLLDHQMNTERGESSYDRLSDAPRAPSDRSLSPPWEQ
DRRMTAHPPPGQPYSDPALQRQDRFYPNSGRLSGPAELRSYNMPSLDKVDGPVPSEMESSGNGTKDNLGN
SNVPDSPIPAECEAAGRGFFPPPFPPVRDPLFPVDPRSQFMRRGPSFPPPPPGSIYAAPRDYFPPRDFPG
PPLPPFPGRTVYAPRGFPPYLPPRAGFFPPPPHPESRSELPPDLIPPSKEPAADPPETQEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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