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Report for CCDS56827.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56827.1 Public Mus musculus 11 Nploc4 23 108 98 CCDS HistoryNCBI Gene:217365Re-query CCDS DB by CCDS ID:56827.1Re-query CCDS DB by GeneID:217365See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56827.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044271.14 ENSMUSP00000035851.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044271.14Link to Ensembl Protein Viewer:ENSMUSP00000035851.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000044271Re-query CCDS DB by Protein ID:ENSMUSP00000035851
Original member Current member NCBI NM_001195023.1 NP_001181952.1 Accepted alive Link to Nucleotide Sequence:NM_001195023.1Link to Protein Sequence:NP_001181952.1Re-query CCDS DB by Nucleotide ID:NM_001195023Re-query CCDS DB by Protein ID:NP_001181952Link to BLAST:NP_001181952.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001181952.1 608 P60670-1 608 100% 0 0

Chromosomal Locations for CCDS 56827.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 120382469 120382626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120383297 120383399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120384543 120384659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120385770 120385865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120389368 120389439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120404206 120404366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120408773 120408899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120409612 120409683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120411658 120411744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120413560 120413739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120416257 120416380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120418245 120418339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120419069 120419117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120421365 120421541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120428524 120428636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120433048 120433128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120437499 120437513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1827 nt):
ATGGCCGAGAGCATCATAATCCGTGTCCAGTCCCCTGATGGCGTGAAGAGGATCACAGCTACGAAGAGAG
AGACGGCTGCCACCTTCCTGAAAAAGGTTGCAAAGGAGTTTGGCTTCCAAAACAACGGCTTCTCAGTTTA
CATCAATAGAAACAAGACTGGAGAGATAACAGCATCGTCCAGCAAATCCCTCCATTTGCTAAAAATCAAG
CATGGCGATTTGTTGTTCCTGTTTCCCTCAAGCCTTGCTGGACCCTCGTCTGAAATGGAAACATCGACCT
CGGTAGGGTTAAAGGCCTTTGGTGCTCCTAACGTGGTTGAAGATGAGATCGATCAATACCTCAGCAAGCA
GGATGGGAAGATTTACCGGAGCCGAGACCCACAGCTATGCCGCCATGGTCCCTTGGGCAAGTGTGTGCAT
TGTGTCCCACTGGAGCCATTTGATGAGGACTATCTGAACCACTTGGAGCCTCCTGTGAAGCACATGTCCT
TCCATGCCTACATCCGGAAGCTGACTGGAGGGGCTGACAAGGGTAAGTTTGTTGCCCTGGAGAACATCAG
CTGCAAGATTAAGTCAGGGTGTGAGGGACACCTCCCATGGCCAAATGGTATCTGCACCAAATGCCAGCCC
AGTGCCATCACGCTGAACAGACAGAAATACCGACACGTGGACAACATCATGTTTGAGAATCATACTGTTG
CTGACCGCTTCCTTGACTTCTGGAGAAAGACCGGAAACCAGCATTTTGGGTACTTATACGGACGGTACAC
AGAGCACAAGGACATTCCCCTCGGCATCAGGGCTGAAGTGGCTGCAATTTACGAGCCTCCTCAGATTGGT
ACACAGAACAGTCTGGAGCTTCTGGAAGACCCGAAAGCTGAGGTGGTTGACGAGATTGCCGCCAAACTTG
GCCTGAGGAAGGTTGGATGGATATTCACGGACCTTGTCTCAGAAGACACCCGAAAGGGTACAGTCCGATA
CAGTCGGAATAAGGACACCTATTTCCTGAGTTCAGAAGAATGCATCACTGCAGGAGACTTTCAAAACAAG
CACCCCAACATTTGCCGGCTCTCTCCCGATGGTCATTTTGGATCCAAGTTTGTTACTGCAGTGGCCACAG
GTGGTCCTGACAACCAGGTTCACTTTGAAGGGTACCAGGTATCCAATCAGTGCATGGCACTAGTCCGAGA
TGAGTGTCTTCTACCTTGTAAGGATGCCCCTGAGCTTGGCTATGCTAAGGAGTCCAGCAGTGAGCAGTAT
GTTCCTGATGTGTTTTATAAGGACATAGACAAGTTTGGCAATGAGATCACCCAGCTGGCCCGTCCCCTGC
CTGTGGAGTATCTCATCATAGATATCACAACCACCTTCCCCAAGGATCCAGTTTACACTTTTTCTATTTC
TCAAAATCCGTTTCCTATCGAAAACCGGGATGTACTGGGTGAAACACAGGACTTCCATAGTTTGGCCACC
TACTTGTCCCAGAATACCTCATCCGTGTTCTTGGATACCATTTCCGACTTCCATCTCCTGCTGTTTCTGG
TCACCAATGAAGTCATGCCGCTGCAGGACAGTATCAGCCTGCTGCTAGAAGCCGTGAGGACCAGAAATGA
GGAGCTAGCACAGACATGGAAAAAGTCTGAACAGTGGGCCACCATTGAGCAGTTATGCAGCACCGTTGGT
GTGCAGCTCCCAGGCCTCCACGAGTTTGGTGCAGTCGGGGGCTCTGCACGCGCTGCTACCTCTGCCATGT
GGGCCTGTCAGCACTGCACCTTCATGAACCAACCTGGCACAGGCCACTGCGAGATGTGCAGCCTCCCCCG
GACCTAG

Translation (608 aa):
MAESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIK
HGDLLFLFPSSLAGPSSEMETSTSVGLKAFGAPNVVEDEIDQYLSKQDGKIYRSRDPQLCRHGPLGKCVH
CVPLEPFDEDYLNHLEPPVKHMSFHAYIRKLTGGADKGKFVALENISCKIKSGCEGHLPWPNGICTKCQP
SAITLNRQKYRHVDNIMFENHTVADRFLDFWRKTGNQHFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIG
TQNSLELLEDPKAEVVDEIAAKLGLRKVGWIFTDLVSEDTRKGTVRYSRNKDTYFLSSEECITAGDFQNK
HPNICRLSPDGHFGSKFVTAVATGGPDNQVHFEGYQVSNQCMALVRDECLLPCKDAPELGYAKESSSEQY
VPDVFYKDIDKFGNEITQLARPLPVEYLIIDITTTFPKDPVYTFSISQNPFPIENRDVLGETQDFHSLAT
YLSQNTSSVFLDTISDFHLLLFLVTNEVMPLQDSISLLLEAVRTRNEELAQTWKKSEQWATIEQLCSTVG
VQLPGLHEFGAVGGSARAATSAMWACQHCTFMNQPGTGHCEMCSLPRT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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