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Genome Displays Related Resources Gene HomoloGene MANE RefSeq
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Report for CCDS56806.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
56806.1 |
Public |
Mus musculus |
11 |
Hap1 |
23 |
108 |
98 |
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Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68
Review status: Reviewed (by RefSeq and Havana)
Attributes |
Nonsense-mediated decay (NMD) candidate |
Sequence IDs included in CCDS 56806.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
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EBI |
ENSMUST00000138603.8 |
ENSMUSP00000133356.1 |
Accepted |
alive |
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NCBI |
NM_177981.2 |
NP_817090.1 |
Accepted |
alive |
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RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_817090.1 |
628 |
O35668-1 |
628 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 56806.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1887 nt): ATGCGCCCGAAAGAGCAGGTGCAGAGCGGTGCGGGAGACGGGACAGGGTCGGGGGACCCAGCAGCAGGCA CCCCCACGACCCAGCCTGCAGTTGGTCCCGCTCCGGAGCCCTCGGCGGAGCCCAAACCTGCTCCAGCGCA GGGAACCGGGTCCGGACAAAAATCAGGATCCCGAACCAAGACAGGAAGCTTTTGTCGGTCCATGATCATT GGTGATTCGGACGCACCATGGACCCGCTACGTATTCCAGGGGCCTTACGGTCCCCGGGCCACTGGCCTGG GCACTGGAAAGGCCGAGGGAATCTGGAAGACACCAGCCGCGTACATCGGCCGGAGGCCCGGCGTGTCCGG CCCTGAGCGTGCGGCGTTTATTCGAGAGCTGCAGGAAGCGTTGTGTCCTAATCCACCACCCACGAAGAAG ATCACCGAAGATGATGTCAAAGTGATGTTGTATTTGCTGGAAGAGAAAGAACGGGACCTGAACACAGCCG CCCGGATCGGCCAGTCCCTGGTGAAACAGAACAGTGTCTTGATGGAGGAGAATAATAAGCTGGAAACCAT GCTGGGCTCAGCCAGGGAGGAGATTTTACATCTCCGGAAGCAGGTGAACCTGCGAGATGACCTTCTTCAG CTCTACTCAGACTCTGATGACGATGATGATGAGGAAGACGAGGAAGACGAGGAAGAGGGCGAAGAGGAGG AACGAGAAGGACAGAGGGATCAAGACCAGCAGCACGACCACCCCTATGGTGCCCCCAAGCCACACCCTAA GGCTGAGACAGCGCACCGCTGCCCACAGCTGGAAACCCTGCAGCAGAAGCTCAGGCTTCTGGAGGAAGAG AACGACCACCTGCGAGAGGAGGCCTCCCACCTTGACAACCTGGAGGACGAAGAGCAGATGCTCATTCTGG AATGTGTGGAGCAGTTCTCTGAAGCCAGCCAGCAGATGGCAGAGCTATCGGAAGTGCTGGTGTTGAGGCT GGAAGGCTATGAGAGGCAGCAGAAAGAGATCACTCAGCTGCAGGCCGAGATCACCAAGCTACAACAGCGT TGTCAGTCTTATGGGGCCCAGACAGAGAAACTGCAGCAGATGCTGGCCTCAGAGAAGGGGATCCACTCGG AGAGCCTGCGAGCTGGCTCCTACATGCAGGATTATGGGAGCAGGCCTCGTGACCGCCAGGAGGATGGGAA GAGTCATCGCCAGCGCTCCTCCATGCCCGCAGGCTCTGTCACCCACTATGGATACAGTGTGCCTCTGGAT GCACTTCCAAGTTTCCCAGAGACACTGGCTGAGGAGCTCCGAACATCTCTGAGGAAGTTCATCACTGACC CTGCGTATTTCATGGAGAGACGTGACACTCACTGCAGGGAGGGGCGGAAGAAGGAGCAGAGGGCGATGCC ACCCCCACCGGCTCAAGATCTCAAGCCACCTGAAGATTTTGAGGCTCCAGAGGAGTTGGTTCCTGAGGAG GAGCTGGGGGCCATCGAAGAGGTGGGGACAGCTGAGGATGGGCAGGCAGAAGAGAACGAGCAGGCGTCTG AGGAGACCGAGGCCTGGGAGGAGGTGGAACCGGAGGTGGACGAGACCACAAGGATGAATGTGGTGGTCTC CGCCCTGGAGGCCAGTGGCCTGGGCCCTTCCCACCTGGACATGAAGTATGTCCTCCAGCAACTGTCCAAC TGGCAGGACGCCCACTCTAAGCGGCAGCAGAAGCAGAAGGTGGTCCCAAAAGACTCCCCAACCCCGCAGC AGCAAACAAACATGGGGGGCGGGATCCTGGAGCAGCAGCCCAGAGTGCCGACCCAGGACTCTCAGAGGCT GGAGGAGGACAGGGCCACTCACTCTCCCAGTGCCAGGGAGGAAGAGGGGCCTTCTGGGGCCACCTAG
Translation (628 aa): MRPKEQVQSGAGDGTGSGDPAAGTPTTQPAVGPAPEPSAEPKPAPAQGTGSGQKSGSRTKTGSFCRSMII GDSDAPWTRYVFQGPYGPRATGLGTGKAEGIWKTPAAYIGRRPGVSGPERAAFIRELQEALCPNPPPTKK ITEDDVKVMLYLLEEKERDLNTAARIGQSLVKQNSVLMEENNKLETMLGSAREEILHLRKQVNLRDDLLQ LYSDSDDDDDEEDEEDEEEGEEEEREGQRDQDQQHDHPYGAPKPHPKAETAHRCPQLETLQQKLRLLEEE NDHLREEASHLDNLEDEEQMLILECVEQFSEASQQMAELSEVLVLRLEGYERQQKEITQLQAEITKLQQR CQSYGAQTEKLQQMLASEKGIHSESLRAGSYMQDYGSRPRDRQEDGKSHRQRSSMPAGSVTHYGYSVPLD ALPSFPETLAEELRTSLRKFITDPAYFMERRDTHCREGRKKEQRAMPPPPAQDLKPPEDFEAPEELVPEE ELGAIEEVGTAEDGQAEENEQASEETEAWEEVEPEVDETTRMNVVVSALEASGLGPSHLDMKYVLQQLSN WQDAHSKRQQKQKVVPKDSPTPQQQTNMGGGILEQQPRVPTQDSQRLEEDRATHSPSAREEEGPSGAT
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