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Report for CCDS56780.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56780.1 Public Mus musculus 11 Epn2 23 108 98 CCDS HistoryNCBI Gene:13855Re-query CCDS DB by CCDS ID:56780.1Re-query CCDS DB by GeneID:13855See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 56780.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000179936.7 ENSMUSP00000136950.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179936.7Link to Ensembl Protein Viewer:ENSMUSP00000136950.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179936Re-query CCDS DB by Protein ID:ENSMUSP00000136950
Original member Current member NCBI NM_001252188.2 NP_001239117.1 Accepted alive Link to Nucleotide Sequence:NM_001252188.2Link to Protein Sequence:NP_001239117.1Re-query CCDS DB by Nucleotide ID:NM_001252188Re-query CCDS DB by Protein ID:NP_001239117Link to BLAST:NP_001239117.1

Chromosomal Locations for CCDS 56780.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 61519418 61519707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61521659 61521874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61522406 61522492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61523029 61523193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61532518 61532692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61533571 61533681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61535271 61535383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61544158 61544328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61546150 61546744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1923 nt):
ATGACAACTTCATCTATCAGACGGCAGATGAAAAACATTGTGAACAATTACTCAGAGGCTGAAATCAAAG
TCCGGGAGGCCACCTCCAATGACCCGTGGGGCCCATCCAGCTCTCTGATGACTGAGATTGCTGACCTGAC
CTACAATGTGGTAGCGTTCTCGGAGATCATGAGCATGGTTTGGAAGCGACTTAATGACCATGGCAAGAAC
TGGCGGCATGTATACAAGGCACTGACACTGCTGGACTACCTTATCAAGACAGGTTCTGAGCGGGTGGCCC
AGCAGTGCCGTGAGAACATCTTTGCCATACAGACTCTGAAGGACTTTCAGTACATTGACCGTGATGGCAA
AGACCAGGGTATTAACGTTCGAGAGAAATCAAAGCAACTGGTTGCGCTCCTCAAGGATGAGGAGCGGCTG
AAGGTTGAGAGAGTTCAGGCTCTCAAAACCAAAGAGCGCATGGCTCAGGTGGCCACTGGCGTGGGCAGCA
ACCAAATCACCTTTGGCCGTGGCTCCAGCCAGCCCAACCTTTCTACCAGCTACTCAGAGCAGGAGTATGG
CAAGGCTGGGGGCTCGCCGGCATCCTACCACGGCTCGCCAGAGGCCTCGCTGTGCCCCCAGCACCGCACA
GGGGCCATGCTGGGTCAGAGTGAGGAGCTGCAGCCACTGAGCCAGCGCCACCCCTGCCTGCCGCACCTGG
GCCTAGCCTCCCACCCTAATGGCGACTGGGCCCAGCCCTGCCTCACTTGTGACCGCGCAGCCCGAGCTAC
TTCCCCACGAGTATCCTCTGAGTTAGAGCAGGCCCGGCCACAGACAAGCGGAGAAGAGGAGCTGCAGCTA
CAACTGGCACTTGCCATGAGCAGAGAGGTTGCTGAGCAGGAAGAACGCCTCAGGCGGGGTGATGACCTCA
GATTGCAGATGGCTCTGGAAGAAAGCCGGAGAGACACAGTAAAAGTTCCAAAAAAGAAAGAGGCGAAAGC
TTGTTGCAAGCCAGGCTCCCACTCCCAGCAGACTACCTTGTTGGATTTAATGGATGCCCTCCCCAGCTCA
GGCCCTGTTACACAGAAAACTGAGCCCTGGAGTGCAGGAGCCTCTGCTAACCAGACCAACCCCTGGGGTG
GAACAGTGGCTCCTTCGAACATTACTGACCCGTGGCCATCGTTTGGTACCAAGCCAGCTGCCTCTGTGGA
CCCCTGGGGAGTACCTACCACAGCCAGCACACAGTCTGTCCCTAAGAACTCAGACCCTTGGGCAGCCTCA
CAGCAGCCTGCCTCCAATGCTGGAAAGACAACAGATGCCTGGGGAGCTGCTAAGCCCAGTTCTGCCTCAG
GGTCCTTTGAGCTCTTCAGTAATTTCAACGGTACAGTTAAAGATGATTTTTCTGAATTTGACAACCTTCG
AACTTCAAAAAAACCAGCTGAGTCAGGGGCCTCAGTGCCACCCCAGGACAGCAGAACCACGAGCCCTGAC
CTCTTTGAGTCTCAATCCTTGACTTCTGCGTCAAGCAAGCCTAGCAGTGCCAGGAAAACACCTGAGTCCT
TCCTGGGCCCCAATGCAGCCCTGGTGAACCTGGACTCATTGGTGACTAAGCCTGCTCCACCAGCTCAGTC
CCTTAATCCCTTCCTGGCACCAGGTGCTGCTGCTCCAGCCCCTGTCAACCCCTTCCAGGTCAACCAGCCC
CAGCCGCTGACACTGAACCAGCTCCGGGGAAGCCCTGTCCTGGGAAGCAGTGCATCCTTTGGGTCTGGTC
CAGGGGTGGAGACTGTGGCTCCCATGACCTCAGTAGCTCCACACTCATCAGTGGGGGCCAGTGGCTCCTC
CTTGACACCACTGGGCCCTACAGCAATGAACATGGTAGGCAGTGTGGGCATTCCCCCATCAGCAGCTCAG
TCAACAGGCACAACAAACCCTTTCCTTCTCTAG

Translation (640 aa):
MTTSSIRRQMKNIVNNYSEAEIKVREATSNDPWGPSSSLMTEIADLTYNVVAFSEIMSMVWKRLNDHGKN
WRHVYKALTLLDYLIKTGSERVAQQCRENIFAIQTLKDFQYIDRDGKDQGINVREKSKQLVALLKDEERL
KVERVQALKTKERMAQVATGVGSNQITFGRGSSQPNLSTSYSEQEYGKAGGSPASYHGSPEASLCPQHRT
GAMLGQSEELQPLSQRHPCLPHLGLASHPNGDWAQPCLTCDRAARATSPRVSSELEQARPQTSGEEELQL
QLALAMSREVAEQEERLRRGDDLRLQMALEESRRDTVKVPKKKEAKACCKPGSHSQQTTLLDLMDALPSS
GPVTQKTEPWSAGASANQTNPWGGTVAPSNITDPWPSFGTKPAASVDPWGVPTTASTQSVPKNSDPWAAS
QQPASNAGKTTDAWGAAKPSSASGSFELFSNFNGTVKDDFSEFDNLRTSKKPAESGASVPPQDSRTTSPD
LFESQSLTSASSKPSSARKTPESFLGPNAALVNLDSLVTKPAPPAQSLNPFLAPGAAAPAPVNPFQVNQP
QPLTLNQLRGSPVLGSSASFGSGPGVETVAPMTSVAPHSSVGASGSSLTPLGPTAMNMVGSVGIPPSAAQ
STGTTNPFLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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