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Report for CCDS56760.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56760.1 Public Mus musculus 11 Meis1 23 108 98 CCDS HistoryNCBI Gene:17268Re-query CCDS DB by CCDS ID:56760.1Re-query CCDS DB by GeneID:17268See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56760.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068264.13 ENSMUSP00000069277.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068264.13Link to Ensembl Protein Viewer:ENSMUSP00000069277.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000068264Re-query CCDS DB by Protein ID:ENSMUSP00000069277
Original member Current member NCBI NM_001193271.1 NP_001180200.1 Accepted alive Link to Nucleotide Sequence:NM_001193271.1Link to Protein Sequence:NP_001180200.1Re-query CCDS DB by Nucleotide ID:NM_001193271Re-query CCDS DB by Protein ID:NP_001180200Link to BLAST:NP_001180200.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180200.1 390 Q60954-1 390 100% 0 0

Chromosomal Locations for CCDS 56760.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 18884024 18884082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18884387 18884476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18885593 18885651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18905689 18905765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18941659 18941804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18988268 18988379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 19011242 19011388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 19012810 19012860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 19013632 19013682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 19014250 19014391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 19016133 19016359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 19018221 19018232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1173 nt):
ATGGCGCAAAGGTACGACGACCTACCCCATTATGGGGGTATGGATGGAGTAGGCATCCCCTCCACGATGT
ATGGGGACCCGCATGCAGCCAGGTCCATGCAACCGGTCCACCACCTGAACCACGGGCCTCCTCTGCACTC
GCATCAGTACCCGCACACAGCTCACACCAACGCCATGGCCCCCAGCATGGGTTCCTCGGTCAATGACGCT
TTAAAGAGAGATAAAGATGCCATTTATGGACACCCCCTCTTCCCTCTCTTAGCACTGATTTTTGAGAAAT
GTGAATTAGCTACTTGTACCCCCCGCGAGCCGGGGGTGGCGGGCGGGGACGTCTGCTCGTCAGAGTCATT
CAATGAAGATATAGCGGTGTTCGCCAAACAGATTCGCGCAGAAAAACCTCTATTCTCTTCTAATCCAGAA
CTGGATAACTTGATGATTCAAGCCATACAAGTGTTAAGGTTTCATCTGTTGGAATTAGAGAAGGTACACG
AATTATGTGACAATTTCTGCCACCGGTATATTAGCTGTTTGAAAGGGAAAATGCCTATCGATTTGGTGAT
AGATGATAGAGAAGGAGGATCAAAATCAGACAGTGAAGATGTAACAAGATCAGCAAATCTAACTGACCAG
CCCTCTTGGAATAGAGACCATGATGACACGGCATCCACTCGTTCAGGAGGAACCCCGGGCCCTTCCAGCG
GTGGCCATACTTCACACAGTGGGGATAACAGCAGTGAGCAAGGTGATGGCTTGGACAACAGTGTAGCTTC
CCCCAGCACAGGTGACGATGATGACCCTGATAAGGACAAAAAGCGTCACAAAAAGCGTGGCATCTTTCCC
AAAGTAGCCACCAATATCATGAGGGCGTGGCTGTTCCAGCATCTAACACACCCTTACCCTTCTGAAGAAC
AGAAAAAGCAGTTGGCACAAGATACAGGACTTACCATCCTTCAAGTGAACAATTGGTTTATTAATGCCCG
GAGAAGAATAGTGCAGCCCATGATAGACCAGTCCAACCGAGCAGTCAGCCAAGGGACACCTTATAACCCT
GATGGACAGCCAATGGGAGGTTTTGTAATGGACGGTCAGCAGCACATGGGCATCAGAGCGCCAGGACCTA
TGAGTGGAATGGGCATGAATATGGGCATGGAGGGGCAGTGGCACTACATGTAA

Translation (390 aa):
MAQRYDDLPHYGGMDGVGIPSTMYGDPHAARSMQPVHHLNHGPPLHSHQYPHTAHTNAMAPSMGSSVNDA
LKRDKDAIYGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFAKQIRAEKPLFSSNPE
LDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGKMPIDLVIDDREGGSKSDSEDVTRSANLTDQ
PSWNRDHDDTASTRSGGTPGPSSGGHTSHSGDNSSEQGDGLDNSVASPSTGDDDDPDKDKKRHKKRGIFP
KVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVSQGTPYNP
DGQPMGGFVMDGQQHMGIRAPGPMSGMGMNMGMEGQWHYM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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