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Report for CCDS56589.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56589.1 Public Homo sapiens 9 ODF2 24 110 108 CCDS HistoryNCBI Gene:4957Re-query CCDS DB by CCDS ID:56589.1Re-query CCDS DB by GeneID:4957See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 56589.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000448249.8 ENSP00000396687.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000448249.8Link to Ensembl Protein Viewer:ENSP00000396687.2Re-query CCDS DB by Nucleotide ID:ENST00000448249Re-query CCDS DB by Protein ID:ENSP00000396687
Original member Current member NCBI NM_001242354.2 NP_001229283.1 Accepted alive Link to Nucleotide Sequence:NM_001242354.2Link to Protein Sequence:NP_001229283.1Re-query CCDS DB by Nucleotide ID:NM_001242354Re-query CCDS DB by Protein ID:NP_001229283Link to BLAST:NP_001229283.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229283.1 576 Q5BJF6-9 576 100% 0 0

Chromosomal Locations for CCDS 56589.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 128460559 128460666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128460942 128461010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128471308 128471468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128472913 128473042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128473610 128473741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128481580 128481651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128482816 128482887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128483938 128484054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128484701 128484886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128485365 128485474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128487890 128488025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128492426 128492536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128492701 128492805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128494510 128494731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1731 nt):
ATGAAGGACCGCTCTTCAACTCCCCCCTTACATGTTCACGTGGATGAGAACACCCCTGTCCACGTCCACA
TA
AAAAAACTCCCGAAACCATCAGCGACCAGCAGCCAGAAATCTCACAAGCGAGGAATGAAAGGGGACAC
T
GTGAATGTGCGGCGGAGTGTCCGGGTGAAAACCAAGGTCAAGATGCAAAAAGGTGAGCGCCAGATGGCC
AAA
AGGTTCCTGGAGGAACGGAAGGAAGAGCTGGAGGAGGTGGCCCACGAACTGGCTGAGACTGAGCACG
AG
AACACGGTGTTGAGGCACAACATCGAGCGCATGAAGGAGGAGAAGGACTTCACCATACTTCAGAAGAA
A
CACCTACAACAGGAGAAGGAGTGCCTCATGTCCAAGCTGGTGGAGGCGGAAATGGATGGGGCTGCGGCT
GCC
AAGCAGGTCATGGCCTTGAAGGATACCATCGGGAAGCTGAAAACAGAGAAACAAATGACCTGCACGG
AC
ATCAACACCCTGACAAGGCAGAAGGAACTTCTCCTGCAGAAGCTGAGCACATTTGAGGAGACCAACCG
C
ACCCTCCGAGACCTCCTGAGGGAACAGCACTGCAAAGAGGATTCTGAAAGACTAATGGAGCAACAAGGA
GCA
CTGCTGAAACGGCTGGCGGAGGCCGACTCAGAGAAAGCGCGCCTGCTGTTACTGCTGCAAGACAAGG
AC
AAGGAGGTGGAAGAGCTCCTTCAGGAAATACAATGTGAGAAGGCTCAAGCAAAGACAGCCTCTGAGCT
T
TCTAAATCCATGGAGTCCATGCGTGGGCATTTGCAGGCACAGCTTCGGTCCAAAGAGGCTGAGAACAGT
CGC
CTGTGCATGCAGATTAAGAATCTGGAGCGCAGCGGGAATCAGCATAAGGCAGAAGTGGAGGCCATCA
TG
GAGCAGCTGAAGGAGTTGAAGCAGAAGGGAGACCGAGACAAAGAGAGCTTGAAGAAGGCCATCCGAGC
C
CAGAAGGAGCGAGCCGAGAAGAGCGAGGAGTATGCTGAGCAGCTACACGTGCAACTCGCTGACAAGGAT
CTT
TATGTCGCTGAAGCTTTATCCACTCTGGAATCCTGGAGGAGCCGCTACAACCAAGTTGTAAAAGAAA
AG
GGAGACCTTGAGCTGGAAATTATTGTCCTGAATGACCGGGTAACAGATCTTGTAAACCAACAACAAAC
C
CTGGAGGAGAAGATGCGGGAAGACCGGGATAGCCTGGTGGAGAGACTACACCGTCAGACTGCTGAGTAT
TCC
GCATTCAAGCTGGAGAATGAGAGGCTGAAGGCCAGCTTTGCTCCAATGGAGGACAAACTCAACCAGG
CA
CACCTCGAGGTCCAGCAGCTGAAGGCCTCAGTGAAGAACTATGAGGGGATGATTGACAACTATAAGAG
T
CAGGTGATGAAGACCAGATTGGAGGCTGATGAAGTAGCTGCCCAGCTAGAACGCTGTGACAAAGAGAAC
AAG
ATCCTTAAAGATGAGATGAACAAAGAGATTGAGGCGGCACGAAGGCAGTTCCAGTCTCAGCTGGCTG
AC
CTGCAGCAGCTCCCTGACATCCTGAAGATCACGGAGGCGAAGCTGGCTGAGTGCCAAGACCAACTGCA
G
GGCTATGAGCGGAAGAACATCGACCTCACAGCCATCATATCAGACCTGCGCAGCCGGGTAAGGGACTGG
CAG
AAAGGGTCCCACGAACTGACCCGAGCAGGGGCCCGCATACCAAGATGA


Translation (576 aa):
MKDRSSTPPLHVHVDENTPVHVHIKKLPKPSATSSQKSHKRGMKGDTVNVRRSVRVKTKVKMQKGERQMA
K
RFLEERKEELEEVAHELAETEHENTVLRHNIERMKEEKDFT
ILQKKHLQQEKECLMSKLVEAEMDGAAA
A
KQVMALKDTIGKLKT
EKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLREQHCKEDSERLMEQQG
A
LLKRLAEADSEKA
RLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRSKEAENS
R
LCMQIK
NLERSGNQHKAEVEAIMEQLKELKQKGDRDKESLKKAIRAQKERAEKSEEYAEQLHVQLADKD
L
YVAEALSTLESWRSRYNQVVKEKGDLELEIIVLN
DRVTDLVNQQQTLEEKMREDRDSLVERLHRQTAEY
S
AFKLENERLK
ASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKEN
K
ILKDEMNKEIEA
ARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRVRDW
Q
KGSHELTRAGARIPR




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser