NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS55102.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55102.1 Public Homo sapiens 7 AOAH 24 110 108 CCDS HistoryNCBI Gene:313Re-query CCDS DB by CCDS ID:55102.1Re-query CCDS DB by GeneID:313See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 55102.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000612871.4 ENSP00000484305.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000612871.4Link to Ensembl Protein Viewer:ENSP00000484305.1Re-query CCDS DB by Nucleotide ID:ENST00000612871Re-query CCDS DB by Protein ID:ENSP00000484305
Original member Current member NCBI NM_001177507.2 NP_001170978.1 Accepted alive Link to Nucleotide Sequence:NM_001177507.2Link to Protein Sequence:NP_001170978.1Re-query CCDS DB by Nucleotide ID:NM_001177507Re-query CCDS DB by Protein ID:NP_001170978Link to BLAST:NP_001170978.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001170978.1 543 P28039-2 543 100% 0 0

Chromosomal Locations for CCDS 55102.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 36513252 36513380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36522039 36522115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36530418 36530514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36532147 36532206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36532286 36532344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36540319 36540491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36548612 36548686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36549439 36549475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36576574 36576656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36594339 36594430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36616380 36616474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36618297 36618345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36620781 36620829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36621710 36621780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36623190 36623250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36632036 36632106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36637851 36637910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36659166 36659265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36673943 36674009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36724022 36724148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1632 nt):
ATGCAGTCCCCCTGGAAAATCCTTACGGTGGCGCCTCTATTCTTGCTCCTGTCTCTTCAGTCCTCGGCCT
CTCCAGCCAACGATGACCAGTCCAGGCCCAGCCTCTCGAATGGGCACACCTGTGTAGAAAAACTGTTCTT
GAAAACCACCTGCTATTTAGTCATTGACAAGTTTGGATCAGACATCATAAAACTGCTTAGCGCAGATATG
AATGCTGATGTGGTATGTCACACTCTGGAGTTTTGTAAACAGAACACTGGCCAACCATTGTGTCATCTCT
ACCCTCTTCCCAAGGAGACATGGAAATTTACACTACAGAAGGCAAGACAAATTGTCAAGAAGTCCCCGAT
TCTGAAATATTCTAGAAGTGGTTCTGACATTTGTTCACTCCCGGTTTTGGCCAAGATCTGCCAGAAAATT
AAATTAGCTATGGAACAGTCTGTGCCATTCAAAGATGTGGATTCAGACAAATACAGCGTTTTCCCAACAC
TGCGGGGCTATCACTGGCGGGGGAGAGACTGTAATGACAGCGACGAGTCAGTGTACCCAGGTAGAAGGCC
GAACAACTGGGATGTCCATCAGGATTCAAACTGTAATGGCATTTGGGGTGTCGATCCAAAAGATGGAGTT
CCATATGAGAAGAAATTCTGTGAAGGTTCACAGCCCAGGGGAATCATTTTGCTGGGAGACTCAGCTGGGG
CTCATTTTCACATCTCTCCTGAATGGATCACAGCGTCGCAGATGTCTTTGAACTCTTTCATCAATCTACC
AACAGCCCTTACCAACGAGCTTGACTGGCCCCAACTCTCTGGTGCTACAGGATTTCTGGACTCCACTGTT
GGAATTAAAGAAAAATCTATTTACCTTCGCTTATGGAAAAGAAACCACTGTAATCACAGGGACTACCAGA
ATATTTCAAGAAATGGTGCATCTTCCCGAAACCTGAAGAAATTTATAGAAAGCTTGTCTAGAAACAAGGT
GTTGGACTATCCCGCCATCGTTATATATGCCATGATTGGAAATGATGTCTGCAGTGGGAAGAGTGACCCA
GTCCCAGCCATGACCACTCCTGAGAAACTCTACTCCAACGTCATGCAGACTCTGAAGCATCTAAATTCCC
ACCTGCCCAATGGCAGCCATGTTATTTTGTATGGCTTACCAGATGGAACCTTTCTCTGGGATAATTTGCA
CAACAGATATCATCCTCTCGGCCAGCTAAATAAAGACATGACCTATGCGCAGTTGTACTCCTTCCTGAAC
TGCCTCCAGGTCAGCCCCTGCCACGGCTGGATGTCTTCCAACAAGACGTTGCGGACTCTCACTTCAGAGA
GAGCAGAGCAACTCTCCAACACACTGAAAAAAATTGCAGCCAGTGAGAAATTTACAAACTTCAATCTTTT
CTACATGGATTTTGCCTTCCATGAAATCATACAGGAGTGGCAGAAGAGAGGCGGACAGCCCTGGCAGCTC
ATCGAGCCCGTGGATGGATTCCACCCCAACGAGGTGGCTTTGCTGTTGTTGGCGGATCATTTCTGGAAAA
AGGTGCAGCTCCAGTGGCCCCAAATCCTGGGAAAGGAGAATCCGTTCAACCCCCAGATTAAACAGGTGTT
TGGAGACCAAGGCGGGCACTGA

Translation (543 aa):
MQSPWKILTVAPLFLLLSLQSSASPANDDQSRPSLSNGHTCVEKLFLKTTCYLVIDKFGSDIIKLLSADM
NADVVCHTLEFCKQNTGQPLCHLYPLPKETWKFTLQKARQIVKKSPILKYSRSGSDICSLPVLAKICQKI
KLAMEQSVPFKDVDSDKYSVFPTLRGYHWRGRDCNDSDESVYPGRRPNNWDVHQDSNCNGIWGVDPKDGV
PYEKKFCEGSQPRGIILLGDSAGAHFHISPEWITASQMSLNSFINLPTALTNELDWPQLSGATGFLDSTV
GIKEKSIYLRLWKRNHCNHRDYQNISRNGASSRNLKKFIESLSRNKVLDYPAIVIYAMIGNDVCSGKSDP
VPAMTTPEKLYSNVMQTLKHLNSHLPNGSHVILYGLPDGTFLWDNLHNRYHPLGQLNKDMTYAQLYSFLN
CLQVSPCHGWMSSNKTLRTLTSERAEQLSNTLKKIAASEKFTNFNLFYMDFAFHEIIQEWQKRGGQPWQL
IEPVDGFHPNEVALLLLADHFWKKVQLQWPQILGKENPFNPQIKQVFGDQGGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH