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Report for CCDS53306.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53306.1 Public Homo sapiens 1 CLDN19 24 110 108 CCDS HistoryNCBI Gene:149461Re-query CCDS DB by CCDS ID:53306.1Re-query CCDS DB by GeneID:149461See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 53306.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000539749.5 ENSP00000443229.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000539749.5Link to Ensembl Protein Viewer:ENSP00000443229.1Re-query CCDS DB by Nucleotide ID:ENST00000539749Re-query CCDS DB by Protein ID:ENSP00000443229
Original member Current member NCBI NM_001185117.2 NP_001172046.1 Accepted alive Link to Nucleotide Sequence:NM_001185117.2Link to Protein Sequence:NP_001172046.1Re-query CCDS DB by Nucleotide ID:NM_001185117Re-query CCDS DB by Protein ID:NP_001172046Link to BLAST:NP_001172046.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001172046.1 218 Q8N6F1-3 218 100% 0 0

Chromosomal Locations for CCDS 53306.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 42735762 42736030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42738421 42738585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42739841 42740063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (657 nt):
ATGGCCAACTCAGGCCTCCAGCTCCTGGGCTACTTCTTGGCCCTGGGTGGCTGGGTGGGCATCATTGCTA
GCACAGCCCTGCCACAGTGGAAGCAGTCTTCCTACGCAGGCGACGCCATCATCACTGCCGTGGGCCTCTA
TGAAGGGCTCTGGATGTCCTGCGCCTCCCAGAGCACTGGGCAAGTGCAGTGCAAGCTCTACGACTCGCTG
CTCGCCCTGGACGGTCACATCCAATCAGCGCGGGCCCTGATGGTGGTGGCCGTGCTCCTGGGCTTCGTGG
CCATGGTCCTCAGCGTAGTTGGCATGAAGTGTACGCGGGTGGGAGACAGCAACCCCATTGCCAAGGGCCG
TGTTGCCATCGCCGGGGGAGCCCTCTTCATCCTGGCAGGTATGAATTTGGCCCAGCCCTGTTCGTGGGCT
GGGCCTCAGCTGGCCTGGCCGTGCTGGGCGGCTCCTTCCTCTGCTGCACATGCCCGGAGCCAGAGAGACC
CAACAGCAGCCCACAGCCCTATCGGCCTGGACCCTCTGCTGCTGCCCGAGAGTACGTCTGAGCTCCGCCT
GCCCTGGCCAGCCCCCCACCCAGTGGCCCCCTTGCCCAGCATCCAGCCAGCCTCGCAGCACCCTGGGCAG
GGCCACTGGGGCATAGGATGGGCATAG

Translation (218 aa):
MANSGLQLLGYFLALGGWVGIIASTALPQWKQSSYAGDAIITAVGLYEGLWMSCASQSTGQVQCKLYDSL
LALDGHIQSARALMVVAVLLGFVAMVLSVVGMKCTRVGDSNPIAKGRVAIAGGALFILAGMNLAQPCSWA
GPQLAWPCWAAPSSAAHARSQRDPTAAHSPIGLDPLLLPESTSELRLPWPAPHPVAPLPSIQPASQHPGQ
GHWGIGWA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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