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Report for CCDS53212.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53212.1 Public Mus musculus X Gm15114 23 108 98 CCDS HistoryNCBI Gene:100034729Re-query CCDS DB by CCDS ID:53212.1Re-query CCDS DB by GeneID:100034729See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 53212.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112788.3 ENSMUSP00000108408.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112788.3Link to Ensembl Protein Viewer:ENSMUSP00000108408.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000112788Re-query CCDS DB by Protein ID:ENSMUSP00000108408
Original member Current member NCBI NM_001082966.1 NP_001076435.1 Accepted alive Link to Nucleotide Sequence:NM_001082966.1Link to Protein Sequence:NP_001076435.1Re-query CCDS DB by Nucleotide ID:NM_001082966Re-query CCDS DB by Protein ID:NP_001076435Link to BLAST:NP_001076435.1

Chromosomal Locations for CCDS 53212.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 148489019 148489034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 148498406 148498531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 148499252 148499331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 148502988 148503898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 148513106 148513187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 148513994 148514043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 148520808 148520844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1302 nt):
ATGGAGAACCATGAAGACGAAATTAGACAGCTGAGATATCTAGAAGCTGCTAATTCTGAAGAAGAATACA
ATGAGGAGAATGACATACAGTCAGAAAGCTCCAGAGGGCAAGCATTTTTCCCTGGACATCCGCGAGGGAG
AGGACACAGACGTGACAGTAGGGGAAGAAATGGCCATTTTTTCAGACAAAGATTTTCAGCAAATCATCCT
CTACTTCATCTGACAAGACAAGTCAACCTAGAAAGTCTAACAAGGAGGAATGGAAACCAATCAGAAGAGA
GACAGCTACAACAAGAAAGAATCCAATTGTTCTTCAGGAGTTTACATGGCCTCTCCCAATCTCATGACCA
CCACATTGGCAGATCTCATGGCCACGATTCCAGAAGATCACGTAATCGATTCAGGAGAGCTCCTGTTCAC
TCAGAGAGATCTCATGTCTACTCAGGTAGAACTAATAACTATACAGATAGACCACACCATGACCTCTCAG
ATAGACCACACAATCAACTCTCAGTGAGACCACATCCTGACCTCTCAGGTAGACCACTTCATGACTACTC
AGGTAGACCACATCAAAACCATGCAGTTAGGCTTCAACATGGCCACTCAGATAGATATCATCTTACCCAT
ACAGAGAGAGTTCTTCCTAACAACTCAGGGATAGCTCATCCTGGCCACACAGAGAGAGATAATCAAGTCC
AAAGAGGGAGAGCTCATGATAACCAATCAGGATTAGCTCATCACAACCATGATGGCAGATCTCATCATGA
CCACTCAGGGAGAGCTTATCACGGCCATGCAAGGAGAGCTCATAACAACCAGTCATGGAGATCTGATAAC
AACCAGTCATGGAGAGATCTTAAACAGTCATGGAGAGGTCAGAACAACCAGTCACAGAGAGGTCATGACA
ACCAGTCACAGAGAGGTCATGACAACCAGTCACAGAGAGGTCATAATGATCAGTCATGGAGAGCTCATAA
CATCCGGTCACGGAGAGATCGTTATCACACCTCATTGAGATCTAGTAGCATCCAGTCATGGATGCTTCAT
GAAAGAGAAAGATACCATGGTCCAAGAGGAAGAAATGGACCAAGGGATGCATCACCACCAGGATCTGAGC
CAGAAATTGACAGATCGTCTGCAATAAGAGAAAGGACTGACTATTTATGGGTACAGGAACATCGAAGAAA
TGAGACAGTTGAACTGAATGTAGCGCTAGAAGACGGCTACAGCAGTGCTGAAGAGAGTGATGAAAGTTTT
GACAGACTAACCTGTAGCTCCATGCTAGATACACTATACTAA

Translation (433 aa):
MENHEDEIRQLRYLEAANSEEEYNEENDIQSESSRGQAFFPGHPRGRGHRRDSRGRNGHFFRQRFSANHP
LLHLTRQVNLESLTRRNGNQSEERQLQQERIQLFFRSLHGLSQSHDHHIGRSHGHDSRRSRNRFRRAPVH
SERSHVYSGRTNNYTDRPHHDLSDRPHNQLSVRPHPDLSGRPLHDYSGRPHQNHAVRLQHGHSDRYHLTH
TERVLPNNSGIAHPGHTERDNQVQRGRAHDNQSGLAHHNHDGRSHHDHSGRAYHGHARRAHNNQSWRSDN
NQSWRDLKQSWRGQNNQSQRGHDNQSQRGHDNQSQRGHNDQSWRAHNIRSRRDRYHTSLRSSSIQSWMLH
ERERYHGPRGRNGPRDASPPGSEPEIDRSSAIRERTDYLWVQEHRRNETVELNVALEDGYSSAEESDESF
DRLTCSSMLDTLY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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