NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS53.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53.1 Public Homo sapiens 1 C1orf174 24 110 108 CCDS HistoryNCBI Gene:339448Re-query CCDS DB by CCDS ID:53.1Re-query CCDS DB by GeneID:339448See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361605.4 ENSP00000355306.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361605.4Link to Ensembl Protein Viewer:ENSP00000355306.3Re-query CCDS DB by Nucleotide ID:ENST00000361605Re-query CCDS DB by Protein ID:ENSP00000355306
Original member Current member NCBI NM_207356.3 NP_997239.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_207356.3Link to Protein Sequence:NP_997239.2Re-query CCDS DB by Nucleotide ID:NM_207356Re-query CCDS DB by Protein ID:NP_997239Link to BLAST:NP_997239.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997239.2 243 Q8IYL3 243 100% 0 0

Chromosomal Locations for CCDS 53.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 3889960 3890073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3890569 3891057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3892883 3892996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3900172 3900186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (732 nt):
ATGAGGAGCCGGAAGCTCACAGGTGCAGTGCGGTCTTCAGCGCGCTTGAAAGCACGAAGTTGTTCGGCAG
CCAGGTTGGCCTCTGCCCAGGAAGTTGCTGGTTCCACGTCTGCCAAGACAGCATGTCTGACTTCCTCATC
CCACAAAGCCACAGACACGCGAACGTCCAAGAAGTTCAAATGTGACAAAGGACATCTTGTGAAGTCAGAA
TTACAGAAGCTTGTCCCTAAGAATGACAGCGCTTCTTTGCCAAAAGTGACACCTGAGACCCCTTGTGAAA
ATGAGTTTGCTGAAGGCAGTGCCTTGCTTCCAGGCAGCGAGGCTGGCGTTTCTGTGCAGCAGGGGGCTGC
AAGTCTTCCTCTCGGTGGCTGCAGAGTTGTGAGTGACTCTCGCTTAGCAAAGACTAGAGATGGCCTGTCC
GTGCCAAAACACAGTGCCGGGTCCGGAGCAGAAGAATCCAACAGCAGCTCCACTGTGCAGAAGCAGAATG
AGCCAGGGCTACAGACAGAGGATGTGCAGAAGCCACCACTTCAGATGGACAACAGCGTCTTTCTAGATGA
CGACAGCAATCAGCCAATGCCCGTGAGCCGGTTCTTTGGAAACGTTGAGCTCATGCAGGACCTCCCACCT
GCGTCTTCATCTTGTCCTTCAATGAGCAGACGAGAGTTCAGAAAAATGCATTTCAGAGCCAAAGATGATG
ATGATGACGACGACGATGATGCAGAAATGTAG

Translation (243 aa):
MRSRKLTGAVRSSARLKARSCSAARLASAQEVAGSTSAKTACLTSSSHKATDTRTSKKFKCDKGHLVKSE
LQKLVPKNDSASLPKVTPETPCENEFAEGSALLPGSEAGVSVQQGAASLPLGGCRVVSDSRLAKTRDGLS
VPKHSAGSGAEESNSSSTVQKQNEPGLQTEDVQKPPLQMDNSVFLDDDSNQPMPVSRFFGNVELMQDLPP
ASSSCPSMSRREFRKMHFRAKDDDDDDDDDAEM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH