NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS52938.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52938.1 Public Mus musculus 9 Kif9 23 108 98 CCDS HistoryNCBI Gene:16578Re-query CCDS DB by CCDS ID:52938.1Re-query CCDS DB by GeneID:16578See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52938.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061155.11 ENSMUSP00000057896.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061155.11Link to Ensembl Protein Viewer:ENSMUSP00000057896.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000061155Re-query CCDS DB by Protein ID:ENSMUSP00000057896
Original member NCBI NM_001163569.1 NP_001157041.1 Updated not alive Link to Nucleotide Sequence:NM_001163569.1Link to Protein Sequence:NP_001157041.1Re-query CCDS DB by Nucleotide ID:NM_001163569Re-query CCDS DB by Protein ID:NP_001157041
Current member NCBI NM_001163569.2 NP_001157041.1 Accepted alive Link to Nucleotide Sequence:NM_001163569.2Link to Protein Sequence:NP_001157041.1Re-query CCDS DB by Nucleotide ID:NM_001163569Re-query CCDS DB by Protein ID:NP_001157041Link to BLAST:NP_001157041.1

Chromosomal Locations for CCDS 52938.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 110483066 110483158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110485035 110485200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110488536 110488642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110489836 110490060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110494402 110494485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110494592 110494684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110495811 110495958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110496917 110496981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110501589 110501666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110506193 110506261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110506661 110506765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110509458 110509513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110510381 110510471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110511321 110511454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110514429 110514623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110517505 110517719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110519035 110519211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110519500 110519615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110521260 110521364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110523727 110523837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2433 nt):
ATGGGTACTAGGAAAAAGGTTCAAGCGTTTGTTCGAGTCAGGCCTACTGATGACTTTGCTCATGAAATGA
TCAAATATGGAGAAGACAACAAAAGCATCGACATCCACTTGAAGAAGGACACTCGGAGAGGGGTTGTCAA
TAACCAGCAGACAGACTGGTCCTTCAAGCTGGATGGAGTGCTTCACAATGCCTCCCAGGACTTGGTTTAT
GAAACAGTTGCCAAGGATGCGGTTTCTCAAGCCCTTGATGGGTACAATGGTACCATCATGTGTTACGGGC
AGACAGGAGCCGGCAAGACATACACCATGACAGGGGCAACGGAGAATTACAAGCACCGCGGAATTCTCCC
TCGTGCCCTGCAGCAGGTGTTCAGGATGATTGAAGAGCGTCCCACGCACGCCATCACAGTCCGTGTTTCC
TACCTGGAAATCTACAATGAGAACCTGTTCGATCTCCTGTCCACTCTGCCCTACGTGGGACCCTCAGTCA
CACCAATGACCATTGTGGAAAACCCTCAAGGGATCTTCATTAAAGGCTTGTCAGTGCATCTCACCAGTCA
AGAGGAGGACGCCTTCAGCCTCCTCTTTGAGGGCGAGACCAACAGGATCATTGCCTCCCACACGATGAAC
AAGAACTCATCCAGGTCGCACTGCATTTTCACCATCTACATGGAGGCCCACTCTCGGACCTTATCAGATG
AAAAGTATATCACTTCTAAAATCAACCTGGTAGATCTGGCAGGCTCAGAGAGGCTCAGCAAGACTGGGTC
TGAAGGTAGAGTCCTAAAGGAAGCCACCTACATCAACAAGTCACTGTCATTCCTGGAGCAGGCCATCATT
GCCCTTGGGGACCAGAATCGGGACCACGTCCCTTTCCGGCAGAGCAAGCTCACCCATGCCCTGAAAGACT
CCTTAGGGGGAAACTGTAATATGGTCCTCGTGACAAACATCTATGGAGAAGCTGCCCAGTTGGATGAAAC
GCTGTCTTCATTGAGGTTTGCCAGCAGGATGAAGCTGGTCACCACTGAGCCTGCCATCAATGAGAAGTAT
GATGCTGAGAGAATGGTCAAGAATTTGGAGAAGGAACTGGCATTGCTTAAGCAGGAACTGGCCATCCATG
ATAGTCTGTCCAACCGCACCCTTGTGAATTATGACCCCATGGATGAAATTCAGATTGCTGAGATCAACTC
TCAAGTACGGAGGTACCTGGAGGGGACGCTGGACGAGATTGACATAATCAATCTAAGGCAGATTCAGGAG
GTATTCAACCAGTTCAGGGTGGTTCTGAGCCAACAGGAGCAGGAAGTAGAGTCTGCCTTGCGCAGGAAGT
ACACTCTCATAGACAAAAATGATTTTGCAGCCATTTCTGCTGTCCAGAAGGTGGGGCTTATGGATATAGA
AGGTAACCTAGTAGGTGAGCCCGATGGACAAAGCTTTGGACTTGGAGTTGCTCCGTTTTCTGTCAAACCT
GGGAAGAAACCTAAGACCAAGAAGACACCGAAGGACCAGTTCAGCTCCTCAGCAAGAAAGGAAGGTGCCA
GTAGCCCTGTGAGTGGCAAGGACTTTGATGTGGCTTCCATCTCCAAGACCCAGCTGATCCCATCTTCCAA
AGATGGGGATCTCAAAGACATGCTTGCACGAGAGAGAGAAACTTCCAGCATTGAACCCCTTATCTCAGAC
TCTCCAAAGGAAGAATTACGTGCGCCCAGACCCAGCACCCCACCCTCTAGGACTGTGGCCTTTGAAGAAT
TTAAGAATGAACGAGGTAGTGAGATCAACCGCATCTTCAAAGAAAACAAATCCATCTTAAATGAACGGAA
GAAAAGGGCCAGCGAGACAACCCAGCGCATCAACGCCATCAAGCAGGAGATTGATGAGACCAAAGATGCA
CTCAATTTCCAGAAATCACTTCGGGAGAAGCAAGGAGAGTACGAGAACAAAGGCCTGATGATCATCGACG
AGGAGGAATTTCTGTTGATCCTGAAGCTCAAAGACCTGAAGAAGCAGTATCGAAATGAGTACCAGGAACT
TAGAGACCTCCGGGCTGAGATCCAATACTGCCAGCGCCTGGTGGATCAGTGTCGCCATCGCCTGCTCATG
GAATTTGACATCTGGTACAATGAGTCTTTTATGATCCCAGAGGACGTTCAGGTAGCACTGAAGCTAGGCA
GCAGCATCCGGCCAGGAATGGTGCCTATCAGCAGGATTGTGTGTCTGGGAGAAGATGACCAGGACAGGTT
CAGCCATCTGCAGCAGACTGTCCTGCCTGAAGGTCTTGATTCCATCACCTTCTACAATGCCAAAGTCAAG
ACAGATCAGAAGGCTTATGGTAGCATCAGAAGAGCATGGTGGAGAGCTGCTTGTATCATCAACGCGCTCA
ATCTGAGAAGGACTGGGGTGGATCAAGGATATGATAAACCTATCAGGCCATAA

Translation (810 aa):
MGTRKKVQAFVRVRPTDDFAHEMIKYGEDNKSIDIHLKKDTRRGVVNNQQTDWSFKLDGVLHNASQDLVY
ETVAKDAVSQALDGYNGTIMCYGQTGAGKTYTMTGATENYKHRGILPRALQQVFRMIEERPTHAITVRVS
YLEIYNENLFDLLSTLPYVGPSVTPMTIVENPQGIFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMN
KNSSRSHCIFTIYMEAHSRTLSDEKYITSKINLVDLAGSERLSKTGSEGRVLKEATYINKSLSFLEQAII
ALGDQNRDHVPFRQSKLTHALKDSLGGNCNMVLVTNIYGEAAQLDETLSSLRFASRMKLVTTEPAINEKY
DAERMVKNLEKELALLKQELAIHDSLSNRTLVNYDPMDEIQIAEINSQVRRYLEGTLDEIDIINLRQIQE
VFNQFRVVLSQQEQEVESALRRKYTLIDKNDFAAISAVQKVGLMDIEGNLVGEPDGQSFGLGVAPFSVKP
GKKPKTKKTPKDQFSSSARKEGASSPVSGKDFDVASISKTQLIPSSKDGDLKDMLARERETSSIEPLISD
SPKEELRAPRPSTPPSRTVAFEEFKNERGSEINRIFKENKSILNERKKRASETTQRINAIKQEIDETKDA
LNFQKSLREKQGEYENKGLMIIDEEEFLLILKLKDLKKQYRNEYQELRDLRAEIQYCQRLVDQCRHRLLM
EFDIWYNESFMIPEDVQVALKLGSSIRPGMVPISRIVCLGEDDQDRFSHLQQTVLPEGLDSITFYNAKVK
TDQKAYGSIRRAWWRAACIINALNLRRTGVDQGYDKPIRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH