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Report for CCDS52874.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52874.1 Public Mus musculus 9 Ttk 23 108 98 CCDS HistoryNCBI Gene:22137Re-query CCDS DB by CCDS ID:52874.1Re-query CCDS DB by GeneID:22137See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52874.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070326.13 ENSMUSP00000064839.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070326.13Link to Ensembl Protein Viewer:ENSMUSP00000064839.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000070326Re-query CCDS DB by Protein ID:ENSMUSP00000064839
Original member NCBI NM_009445.2 NP_033471.2 Updated not alive Link to Nucleotide Sequence:NM_009445.2Link to Protein Sequence:NP_033471.2Re-query CCDS DB by Nucleotide ID:NM_009445Re-query CCDS DB by Protein ID:NP_033471
Current member NCBI NM_009445.3 NP_033471.2 Accepted alive Link to Nucleotide Sequence:NM_009445.3Link to Protein Sequence:NP_033471.2Re-query CCDS DB by Nucleotide ID:NM_009445Re-query CCDS DB by Protein ID:NP_033471Link to BLAST:NP_033471.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033471.2 830 P35761-2 830 100% 0 0

Chromosomal Locations for CCDS 52874.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 83835789 83835924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 83839200 83839413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 83839726 83839832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 83843081 83843224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 83843628 83843742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 83843884 83843956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 83844047 83844141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 83845913 83845997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 83847135 83847252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 83850572 83850708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 83853087 83853175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 83854803 83854929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 83857318 83857410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 83862162 83862319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 83862448 83862599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 83863445 83863569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 83865078 83865158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 83868043 83868219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 83868576 83868660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 83869183 83869280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 83871985 83872068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2493 nt):
ATGGAGGCTGAAGAGTTAATTGGCAGCAGTGTGACGATTGATTCCATCATGAGCAAAATGAGAGATATTA
AAAATAAGATAAATGAAGACTGTACTGATGAGCTAAGCTTGTCTAAAATCTGTGCCGATCACACGGAAAC
TGTTAACCAAATTATGAGGGTTGGGAACACCCCAGAGAACTGGTTGAATTTCTTGCTGAAACTAGAGAAA
AACAGCTCACCTCTAAATGACGATCTTTTAAATAAGCTGATTGGTCGGTATAGTCAAGCGATTGAAGTAC
TTCCTCCAGATAAATACGGCCAGAATGAGAGCTTTGCTCGAATACAAGTGAGACTTGCTGAACTAAAAGC
TATTCAAGAGCCTGATGATGCCCGTGACTACTTCCAGATGGCCAGGGAAAACTGCAAGAAGTTTGCTTTT
GTGCACGTATCTTTTGCACAGTTTGAACTGTCTCAAGGCAATCTTAAAAAAAGTGAGCAGCTTCTTCATA
AAGCTGTAGAGACTGGGGCGGTGCCGCTGCAGATGCTGGAGACGGCCATGCGTAACTTACACCTCCAGAA
AAAGCAGCTGCTTCCGGAGGAGGACAAGAAGAGTGTGTCAGCATCGACAGTACTAAGTGCCCAAGAGCCG
TTCTCCAGCTCACTTGGAAATGTACAGAATCGGAGCATCAGCTGTGAGTCCAGAGGACAGGCTGGGGCAG
CCAGGGTTTTATATGGAGAGAACTTGCCTCCACAAGATGCCGAAGTGAGGCATCAAAACCCCTTCAAGCA
GACTCACGCAGCTAAACGGTCATGCCCCTTTGGAAGAGTCCCAGTCAATCTTCTAAACAGCCCAGATTTC
TATGTGAAGACAGATAGCTCAGCTGTGACACAGTTAACAACAAGAAAGGGGTCAGGACCAGACCGAGACG
CGATTCTGCCCGGCTCCAGACCACGTGGCAGTGATTCCTATGAACTGAGAGGTTTAAAGCCCATTCAAAC
TATCTATTTGAAAGACTCTTTGGTGTCCAATGAAAAGAGTTCTGAACTTATGTCTGATTTAATAGCCTTG
AAGAGTAAAACAGATTCAAGTCTAACAAAATTGGAAGAAACTAAGCCAGAGATTGCAGAAAGAAGGCCCA
TGCAGTGGCAGTCTACCAGAAAGCCCGAGTGTGTGTTCCAGAACCCTGCTGCCTTTGCACCCCTGCGGCA
CGTTCCAGATGTCACCCCGAAGGCTGACAAAGAGTCACCACCAATATCAGTTCCTAAATGGCTTGATCCA
AAGTCTGCTTGTGAGACACCTAGTAGCAGCTCCTTGGATGATTACATGAAATGTTTTAAGACTCCAGTTG
TAAAGAATGACTTTCCACCTGCCTGTCCATCATCAACACCTTACAGCCAGCTTGCCCGCCTCCAGCAGCA
ACAGCAGCAGGGACTCAGCACTCCTCTTCAAAGCTTGCAGATTTCAGGTTCTTCATCAATAAATGAATGC
ATTTCAGTTAACGGAAGAATTTATTCCATATTAAAGCAGATAGGCAGTGGAGGTTCCAGTAAGGTGTTTC
AGGTATTGAATGAGAAAAAACAGATAAACGCTATCAAATATGTGAACCTAGAAGACGCCGATAGCCAAAC
TATTGAGAGCTACCGCAACGAGATAGCGTTTTTGAACAAACTACAGCAACACAGTGATAAGATCATCCGC
CTCTATGATTATGAAATCACCGAGCAGTACATCTACATGGTAATGGAATGTGGAAACATTGACCTAAATA
GTTGGCTTAAAAAGAAAAAATCCATCAATCCATGGGAACGCAAGAGCTACTGGAAAAACATGTTGGAGGC
AGTACACATAATCCATCAGCATGGTATTGTTCATAGTGATCTGAAGCCTGCTAACTTTGTGATAGTGGAT
GGAATGCTAAAGCTAATTGATTTTGGGATTGCAAACCAAATGCAGCCAGACACAACAAGCATTGTTAAAG
ATTCTCAGGTTGGCACAGTTAACTATATGGCCCCAGAAGCAATCAGAGACATGTCTTCTTCAAGAGAAAA
TTCGAAAATCAGGACCAAGGTAAGTCCCAGAAGTGATGTCTGGTCCTTGGGGTGCATTTTGTACTACATG
ACTTATGGGAGGACGCCATTTCAGCACATCATCAATCAGGTCTCTAAACTGCACGCCATAATCAACCCTG
CTCATGAGATTGAATTTCCCGAGATTTCGGAAAAAGATCTTCGAGACGTGTTAAAGTGCTGTTTAGTGAG
GAACCCTAAAGAGAGGATATCTATCCCTGAGCTTCTCACACATCCGTATGTTCAAATTCAGCCCCATCCA
GGCAGCCAAATGGCTAGGGGAGCCACTGATGAAATGAAATATGTGTTGGGTCAACTTGTTGGTCTGAATT
CTCCTAACTCCATCTTGAAAACTGCAAAAACTTTGTATGAACGTTATAATTGTGGTGAAGGTCAAGATTC
TTCGTCATCCAAGACTTTTGACAAAAAGAGAGAAAGAAAGTGA

Translation (830 aa):
MEAEELIGSSVTIDSIMSKMRDIKNKINEDCTDELSLSKICADHTETVNQIMRVGNTPENWLNFLLKLEK
NSSPLNDDLLNKLIGRYSQAIEVLPPDKYGQNESFARIQVRLAELKAIQEPDDARDYFQMARENCKKFAF
VHVSFAQFELSQGNLKKSEQLLHKAVETGAVPLQMLETAMRNLHLQKKQLLPEEDKKSVSASTVLSAQEP
FSSSLGNVQNRSISCESRGQAGAARVLYGENLPPQDAEVRHQNPFKQTHAAKRSCPFGRVPVNLLNSPDF
YVKTDSSAVTQLTTRKGSGPDRDAILPGSRPRGSDSYELRGLKPIQTIYLKDSLVSNEKSSELMSDLIAL
KSKTDSSLTKLEETKPEIAERRPMQWQSTRKPECVFQNPAAFAPLRHVPDVTPKADKESPPISVPKWLDP
KSACETPSSSSLDDYMKCFKTPVVKNDFPPACPSSTPYSQLARLQQQQQQGLSTPLQSLQISGSSSINEC
ISVNGRIYSILKQIGSGGSSKVFQVLNEKKQINAIKYVNLEDADSQTIESYRNEIAFLNKLQQHSDKIIR
LYDYEITEQYIYMVMECGNIDLNSWLKKKKSINPWERKSYWKNMLEAVHIIHQHGIVHSDLKPANFVIVD
GMLKLIDFGIANQMQPDTTSIVKDSQVGTVNYMAPEAIRDMSSSRENSKIRTKVSPRSDVWSLGCILYYM
TYGRTPFQHIINQVSKLHAIINPAHEIEFPEISEKDLRDVLKCCLVRNPKERISIPELLTHPYVQIQPHP
GSQMARGATDEMKYVLGQLVGLNSPNSILKTAKTLYERYNCGEGQDSSSSKTFDKKRERK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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