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Report for CCDS52858.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52858.1 Public Mus musculus 9 Atosa 23 108 98 CCDS HistoryNCBI Gene:235493Re-query CCDS DB by CCDS ID:52858.1Re-query CCDS DB by GeneID:235493See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52858.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081746.6 ENSMUSP00000080442.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081746.6Link to Ensembl Protein Viewer:ENSMUSP00000080442.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000081746Re-query CCDS DB by Protein ID:ENSMUSP00000080442
Original member Current member NCBI NM_153584.2 NP_705812.2 Accepted alive Link to Nucleotide Sequence:NM_153584.2Link to Protein Sequence:NP_705812.2Re-query CCDS DB by Nucleotide ID:NM_153584Re-query CCDS DB by Protein ID:NP_705812Link to BLAST:NP_705812.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_705812.2 1082 Q69ZK7-2 1082 100% 0 0

Chromosomal Locations for CCDS 52858.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 74976240 74976276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75004265 75004449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75006288 75006490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75006962 75007087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75008651 75010466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75012941 75013054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75015844 75015923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75017038 75017146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75018997 75019155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75023585 75023653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75025651 75025847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75031515 75031668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3249 nt):
ATGGTTTTCAGTGGGAACAAAGGGCTCCGCAGACAAGATGCCTTGGATGAGTATTTTGAATATGACGCAG
AGGAGTTCTTGGTCTCTTTGGCCTTGCTGATAACTGAAGGACGAACCCCGGAGTGCTCTGTGAAAGGCCG
TGCAGAGAGTTTCCACTGCCCTCCAGCGCAGTCTCGCTTCCCAGGAACGGCCAGACATGAATGCAGCGAC
AAGCTGGCCCAGTGTCGCCAAGCCAGACGAACCAGATCTGAGGTCACACTGTTGTGGAAAAATAATCTCC
CAATCATGGTGGAGGTGATGCTCCTGCCGGATTGCTGCTACAGTGACGAGGGGCCTAGTACAGAGGGGGC
AGATCTGAATGATCCCGCCATTAAGCAAGACGCACTGTTACTGGAGAGGTGGATCTTGGAGCCAGTTCCC
CGACAGAATGGTGACCGCTTCATCGAAGAGAAGGCACTTCTGCTGGCTGTCAGATCATTTGTGTTTTTTT
CTCAGTTAAGTGCTTGGCTGAGTGTTTCTCATGGTGCTATTCCACGAAACATTCTTTACAGAATCAGTGC
TGCGGATGTCGACCTGCAGTGGAGTTTTTCACAGACTCCAACTGAGCATGTGTTTCCCGTCCCCAATGTC
TCTCACAATGTGGCCTTGAAAGTCAGCGTTCAGTCCTTACCCAGACAAGCTCATTATCCGGTTTTGACCT
GTAGTATTCATACTAACATTGGTCTGTATGAGAAGAGAATTCAAGAACAGGAGCTTAGAGCCTGTCAGCA
CCATGGCCCTGGTGAGGTGGAGTACCGTTGTCCCAGCAGCTCACAGAGCCTATGCAGCAAGCACACATGG
ACCATGGCACCCGTGAGTGCCCTGCACGTCAGAAGTGGCATGCCTCCCGAGTACACTGCAGCCATTAGAA
ATGTCAGGCTCTGCCCAGGCACAGGCAGCAAGTCTGACCAGGGGGCACCTCAAGCCAGTGTCCTGGGCTT
CAGTGGCACTGGGGGAGAAGTGAGGTCACAGGAGGCGTCAGTGAGAACGTTCAAATCACTGCCTGTGGTC
GATTCCAGTGTCTCCAGCTGTCAGAGCTCTCGGCAGCCAGTAGGGGAACCTAACCCTTTAATGGACTCCT
TGATTCAGGATCGACAAGAAGTCATTGCCAGGATTGCTCAGCACTTGATTCACTGTGACCCCAGCTCCTC
TAGAATGTCTGAACTCCCCTTTAACACCCAGGAGTCCACGTCACTTAGCCCAAAGCTTCACCCAGTTTCA
CAGGAAAGTGGGTGTGTGAGGAGATATAAAGAAGCATTCTCTGTCTCCTTTGGGAGTCCAGAGTTTGGCT
CCCCAGGAGACAGCAGGGAGGGGAAAGTCAGAGAGAAGTCAGAAACCAGGCCAGGAGAAACTTGCACTTC
TCACAGTCTGTACCCTCGCCAGCCTGCTGGGGAGGCGAACCCACTGATTGGCTCTTTACTCCAGGAGCGG
CAGGACGTCATAGCCAGGATTGCACAGCACCTAGAACACATCGACCCCGCAGCTCACATTCCCCGGCCTG
CATTCAGCAAGCACGACTCCAATTCCATTCCTTCTAAAGTGTTCAGGAGTTCATTTGATGACAAAACCTT
GTTGAAGAAGGGCAGAGAGAATGTCTCTGTCTCTGTGTCTCATACAGAAGTGTCCTTATTGGGAGACAGA
GGTGATGGGGAAAGCCTCAAACCTAGTAAATGCTTGCGATCTTTCAAATACAGCCCTCAAGAAAAGCCTT
TGAAACCTGAAGTAAGAACTCAGCATCAGAACCATCCTGATAGCATCACCCCCACAGCCAGGCAGGAGCT
GCTGAACAAGGCTGCTGGCTTACTAACTTCCTCTAACACAGCTCTCTGCAAAGAAAGCAGCTTGGGTTTG
GTTAGCAGATTGGAAAGTACATCTTGTAAATTACAACTTAAGGAGCAAGAAATGAGCCATGAAACTGAGA
AACAGTGTTTGCATTGCAACAGTATTGACAAACAGATTTGCACAAATACATGTACGGAGAAAATCAACGA
CGAGCATAGTCCAGGATCTCTCCGTCATCTCCAGTGTGATGATTCAAAAGGTATTGACTCAAAACTAAAA
GTGACTCTGCTGGAAATGCCTGACAGTTTGAACAAGAACAAAACTAATTGTTCAAGTAAAGACTCCAAAA
GATCCAAGACGTGTGAGCAAAGCATTCGGGTTGGCACAGAAAATGACCTCAGTGAAGAGAATGAGGGTCC
CGGAAGCACTGTATCAGACCGACTCAAAACTGAGCAGGAGGCAAAAAGGGACTCAGGTGCTGGAAAACCT
CACAGCGTAAAGCACTGTTTGTCTGCAGGCGAGAGGCTGCACAGCGCAGACATGTTGAGGACTACACTGA
AACATTCAAGTGTCTGGAGGAAACATAATTTTCATTCCTTGGATGGGACATCAACCAGAGCCTTTCATCC
TCAGACGGGGCTGCCTCTCCTCTCAAGTCCAGTTCCTCAAAGAAAAACACAGTCAGGCTGCTTTGATCTA
GACGCGTCGCTGCTGCATCTGAGAAGCCTATCCTCCAAAAGCTCTCGGCCATGCCTGAATATTGACGAGG
ACCCAGATGTTCATGAAAAACCTTTTTTGAGTTCAAGTGCTCCACCAATCACAAGTCTTAGTCTCCTAGG
AAATTTTGAGGAATCGGTTCTGAACTACCGTTTAGACCCCCTCGGCATAGTCGATGGCTTTACGGCCGAG
GTGGGAGCCAGTGGGACTTTCTGCCCAACGCACTTGACTCTGCCAGTGGAAGTGTCGTTCTACAGTGTTT
CCGATGATAATGCTCCCTCGCCTTACATGGGTGTGATTACTTTAGAGTCCCTTGGTAAAAGGGGTTATCG
AGTACCTCCTTCAGGAACGATACAAGTGACCTTATTCAATCCCAATAAGACTGTGGTGAAGATGTTTGTA
GTCGTGTATGACCTACGAGGTATGCCAGCCAATCACCAGACATTCCTGAGACAGAGGACGTTCTCAGTTC
CTGTTAAACAAGAGATGAAGAGAAGTATTAACAAAGAGAACGTCCAGCACACGGCACAGTTACTACGCTA
CCTCATACACCTGAGGTTCCAGAGTTCTAAATCTGGAAAGATCTACCTCCATAGAGATGTCCGGCTCCTG
TTCTCTAGAAAGTCCATGGAGGTCGATAGCGGTGCTGCGTATGAACTCAAATCCTACACTGAGTCGCCAA
CAAACCCTCAGTTTTCACCAAGATGTTGA

Translation (1082 aa):
MVFSGNKGLRRQDALDEYFEYDAEEFLVSLALLITEGRTPECSVKGRAESFHCPPAQSRFPGTARHECSD
KLAQCRQARRTRSEVTLLWKNNLPIMVEVMLLPDCCYSDEGPSTEGADLNDPAIKQDALLLERWILEPVP
RQNGDRFIEEKALLLAVRSFVFFSQLSAWLSVSHGAIPRNILYRISAADVDLQWSFSQTPTEHVFPVPNV
SHNVALKVSVQSLPRQAHYPVLTCSIHTNIGLYEKRIQEQELRACQHHGPGEVEYRCPSSSQSLCSKHTW
TMAPVSALHVRSGMPPEYTAAIRNVRLCPGTGSKSDQGAPQASVLGFSGTGGEVRSQEASVRTFKSLPVV
DSSVSSCQSSRQPVGEPNPLMDSLIQDRQEVIARIAQHLIHCDPSSSRMSELPFNTQESTSLSPKLHPVS
QESGCVRRYKEAFSVSFGSPEFGSPGDSREGKVREKSETRPGETCTSHSLYPRQPAGEANPLIGSLLQER
QDVIARIAQHLEHIDPAAHIPRPAFSKHDSNSIPSKVFRSSFDDKTLLKKGRENVSVSVSHTEVSLLGDR
GDGESLKPSKCLRSFKYSPQEKPLKPEVRTQHQNHPDSITPTARQELLNKAAGLLTSSNTALCKESSLGL
VSRLESTSCKLQLKEQEMSHETEKQCLHCNSIDKQICTNTCTEKINDEHSPGSLRHLQCDDSKGIDSKLK
VTLLEMPDSLNKNKTNCSSKDSKRSKTCEQSIRVGTENDLSEENEGPGSTVSDRLKTEQEAKRDSGAGKP
HSVKHCLSAGERLHSADMLRTTLKHSSVWRKHNFHSLDGTSTRAFHPQTGLPLLSSPVPQRKTQSGCFDL
DASLLHLRSLSSKSSRPCLNIDEDPDVHEKPFLSSSAPPITSLSLLGNFEESVLNYRLDPLGIVDGFTAE
VGASGTFCPTHLTLPVEVSFYSVSDDNAPSPYMGVITLESLGKRGYRVPPSGTIQVTLFNPNKTVVKMFV
VVYDLRGMPANHQTFLRQRTFSVPVKQEMKRSINKENVQHTAQLLRYLIHLRFQSSKSGKIYLHRDVRLL
FSRKSMEVDSGAAYELKSYTESPTNPQFSPRC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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