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Report for CCDS52813.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52813.1 Public Mus musculus 9 Loxl1 23 108 98 CCDS HistoryNCBI Gene:16949Re-query CCDS DB by CCDS ID:52813.1Re-query CCDS DB by GeneID:16949See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52813.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061799.9 ENSMUSP00000057406.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061799.9Link to Ensembl Protein Viewer:ENSMUSP00000057406.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000061799Re-query CCDS DB by Protein ID:ENSMUSP00000057406
Original member Current member NCBI NM_010729.3 NP_034859.2 Accepted alive Link to Nucleotide Sequence:NM_010729.3Link to Protein Sequence:NP_034859.2Re-query CCDS DB by Nucleotide ID:NM_010729Re-query CCDS DB by Protein ID:NP_034859Link to BLAST:NP_034859.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034859.2 607 P97873 607 99.8353% 0 1

Chromosomal Locations for CCDS 52813.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 58288911 58288917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58290755 58290870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58292569 58292664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58293573 58293729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58294359 58294496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58297621 58297729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58311686 58312886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1824 nt):
ATGGCTCTGGCCGGAGCCGGCAGCCAGCTGAGGACCCTGGTGTGGAGTGCCTGCCTGTGCGTCCTGGTGC
ACGGGCAGCAAGCGCAGCCAGGACAGGGCTCGGACCCAGGACGCTGGCGGCAGCTGATCCAGTGGGAGAA
CAACGGGCAGGTGTACAGCTTGCTCAACTCGGGCTCTGAGTACGTGCCCGCGGGGCCCCAACGAGGGGAG
ACTAGCTCCAGGGTTCTACTGGCAGGCGCGCCCCAAACGTCGCAGCGGCGCAGTCAGGGGGGACCCCGGC
GTCGGCAGGCGCCGTCCCTGCCCCTGCCCGGACGCGTGGGTTCGGACACTGTGCGCGGCCAAACGCGGCA
CCCGTTCGGCTTCGGCCAGGTGCCCGACAACTGGAGAGAGGTGGCCGTCGGGGACAGTACCGGCATGGCT
CGGGCCCGCACCTCCGTCTCCCAGCAACGGCACGGGGGCTCCGCCTCCTCCTCGGTTTCGGCCTCGGCCT
TCGCCACCACCTATCGCCAGCCATCCTCCTACCCGCAGCAGTTCCCCTATCCGCAGGCGCCCTTCGTAAA
CCAGTATGAGAACTACGATCCCGCGTCACGGACCTACGAACAGGGCTACGTGTACTACCGTGGTGCGGGC
GGCGGCATGGGCGCGGGGGCAGCGGCTGTAGCCTCGGCTGGGGTCATCTATCCCTTCCAGCCCCGGGCGC
GTTACGAGGACTACGGAGGTGGAGGAGGCGAGGAGCAGCCCGAGTACCCGGCCCAGGGCTTTTACCCAGC
CCCAGAGAGGCCCTATGTGCCCCAGCCCCAACCCCAGCCCCAGCCCCAGCCGCAGCCTCAGCCCCAACCT
TCCGACGGCCTTGACCGTCGTTACTCGCACAGCCTGTACAATGAAGGCACCCCGGGATTCGAGCAGGCCT
ACCCTGATCCCAGCACCGACGTGTCGCAGGCCCCCGCGGGGGCCGGTGGCACCTACGGTGGCGCTGGCGA
TCCTCGCCTCGGCTGGTACCCGCCCTATGCAGCCAATGTGCCACCGGAGGCCTACGTCCCTCCGCGTGCG
GTGGAGCCACAGCCCCCATTCCGCGTGCTGGAGCCACCTTACTTGCCCGTGCGAAGCTCTGATGCGCCCT
CCCAGGGTGGGGAGCGGAACGGCGCCCAGCAGGGCCGTCTCAGCGTGGGTAGTGTGTACCGACCCAACCA
GAATGGTCGCGGCCTCCCTGACTTAGTCCCGGACCCTAACTACGTGCAGGCATCCACATACGTGCAGAGA
GCCCATCTGTACTCCTTGCGATGCGCAGCAGAGGAGAAGTGCCTGGCCAGCACAGCCTATGCCCCTGAGG
CTACCGACTATGACCTCCGAGTGCTATTGCGCTTCCCCCAGCGAGTGAAAAACCAAGGCACAGCGGACTT
TCTCCCCAACCGGCCACGCCACACCTGGGAGTGGCATAGCTGTCACCAACATTACCACAGCATGGACGAG
TTCAGCCACTACGACCTGCTTGATGCATCCACGGGCAAGAAGGTAGCCGAGGGACACAAGGCCAGCTTCT
GCCTGGAGGACAGCACCTGTGACTTCGGCAACCTCAAGCGCTATGCCTGCACCTCTCACACGCAGGGCCT
GAGTCCAGGCTGCTATGACACATACAATGCGGACATTGACTGCCAGTGGATCGACATAACTGATGTGCAG
CCTGGGAACTACATCCTCAAGGTGCACGTGAACCCCAAGTACATTGTTCTGGAGTCTGACTTCACCAACA
ACGTGGTGAGATGCAACATCCACTACACAGGTCGCTACGTTTCTACAACAAACTGCAAAATCGTCCAGTC
CTGA

Translation (607 aa):
MALAGAGSQLRTLVWSACLCVLVHGQQAQPGQGSDPGRWRQLIQWENNGQVYSLLNSGSEYVPAGPQRGE
TSSRVLLAGAPQTSQRRSQGGPRRRQAPSLPLPGRVGSDTVRGQTRHPFGFGQVPDNWREVAVGDSTGMA
RARTSVSQQRHGGSASSSVSASAFATTYRQPSSYPQQFPYPQAPFVNQYENYDPASRTYEQGYVYYRGAG
GGMGAGAAAVASAGVIYPFQPRARYEDYGGGGGEEQPEYPAQGFYPAPERPYVPQPQPQPQPQPQPQPQP
SDGLDRRYSHSLYNEGTPGFEQAYPDPSTDVSQAPAGAGGTYGGAGDPRLGWYPPYAANVPPEAYVPPRA
VEPQPPFRVLEPPYLPVRSSDAPSQGGERNGAQQGRLSVGSVYRPNQNGRGLPDLVPDPNYVQASTYVQR
AHLYSLRCAAEEKCLASTAYAPEATDYDLRVLLRFPQRVKNQGTADFLPNRPRHTWEWHSCHQHYHSMDE
FSHYDLLDASTGKKVAEGHKASFCLEDSTCDFGNLKRYACTSHTQGLSPGCYDTYNADIDCQWIDITDVQ
PGNYILKVHVNPKYIVLESDFTNNVVRCNIHYTGRYVSTTNCKIVQS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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