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Report for CCDS52656.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52656.1 Public Mus musculus 8 Cbfb 23 108 98 CCDS HistoryNCBI Gene:12400Re-query CCDS DB by CCDS ID:52656.1Re-query CCDS DB by GeneID:12400See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52656.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109394.2 ENSMUSP00000105021.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109394.2Link to Ensembl Protein Viewer:ENSMUSP00000105021.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109394Re-query CCDS DB by Protein ID:ENSMUSP00000105021
Original member Current member NCBI NM_001161456.1 NP_001154928.1 Accepted alive Link to Nucleotide Sequence:NM_001161456.1Link to Protein Sequence:NP_001154928.1Re-query CCDS DB by Nucleotide ID:NM_001161456Re-query CCDS DB by Protein ID:NP_001154928Link to BLAST:NP_001154928.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001154928.1 148 Q08024-4 148 100% 0 0

Chromosomal Locations for CCDS 52656.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 105170976 105171053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105171306 105171392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105194475 105194591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105202452 105202547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105215904 105215972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (447 nt):
ATGCCGCGCGTCGTCCCGGACCAGAGGAGCAAGTTCGAGAACGAGGAGTTCTTCAGGAAGCTGAGCCGCG
AGTGCGAGATTAAGTACACGGGCTTCAGGGACCGGCCCCACGAGGAGCGCCAGACACGCTTCCAGAACGC
CTGCCGCGACGGTCGCTCGGAGATCGTATACTTGAAGGCTCCCATGATTCTGAATGGAGTGTGTGTTATA
TGGAAGGGCTGGATTGATCTCCACAGATTGGATGGTATGGGTTGCCTGGAGTTTGATGAGGAGCGAGCCC
AGCAGGAAGATGCATTAGCACAACAGGCCTTTGAAGAGGCTCGAAGAAGAACTCGAGAATTTGAGGATAG
AGACAGGTCTCACCGGGAGGAAATGGAGGCAAGAAGACAGCAAGACCCTAGTCCTGGTTCTAACTTAGGT
GGCGGTGATGATCTCAAACTTCGTTAA

Translation (148 aa):
MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQTRFQNACRDGRSEIVYLKAPMILNGVCVI
WKGWIDLHRLDGMGCLEFDEERAQQEDALAQQAFEEARRRTREFEDRDRSHREEMEARRQQDPSPGSNLG
GGDDLKLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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