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Report for CCDS52628.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52628.1 Public Mus musculus 8 Cnep1r1 23 108 98 CCDS HistoryNCBI Gene:382030Re-query CCDS DB by CCDS ID:52628.1Re-query CCDS DB by GeneID:382030See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52628.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095214.9 ENSMUSP00000092839.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095214.9Link to Ensembl Protein Viewer:ENSMUSP00000092839.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000095214Re-query CCDS DB by Protein ID:ENSMUSP00000092839
Original member Current member NCBI NM_029074.3 NP_083350.2 Accepted alive Link to Nucleotide Sequence:NM_029074.3Link to Protein Sequence:NP_083350.2Re-query CCDS DB by Nucleotide ID:NM_029074Re-query CCDS DB by Protein ID:NP_083350Link to BLAST:NP_083350.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083350.2 125 Q3UJ81-1 125 100% 0 0

Chromosomal Locations for CCDS 52628.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 88118845 88118869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88119780 88119851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88125082 88125155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88129695 88129804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88130347 88130401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 88133788 88133829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (378 nt):
ATGAACTCGCTGGAACAAGCGGAAGATCTCAAGGCTTTCGAAAGAAGACTTACTGAATATATTCATTGCT
TGCAACCTGCCACTGGACGTTGGAGAATGCTTCTTATAGTGGTGTCTGTCTGTACAGCTACTGGTGCCTG
GAACTGGCTAATAGATCCTGAGACACAAAAGGTGTCCTTCTTCACGTCATTATGGAACCATCCGTTTTTC
ACTATTAGCTGTATAACTCTAATAGGCTTGTTCTTTGCTGGAATACACAAAAGAGTAGTCGCACCATCAA
TTATAGCTGCTCGATGTCGAACGGTATTAGCAGAATACAATATGTCCTGTGATGATACAGGAAAGCTAAT
TTTGAAACCTAGACCTCATGTTCAATGA

Translation (125 aa):
MNSLEQAEDLKAFERRLTEYIHCLQPATGRWRMLLIVVSVCTATGAWNWLIDPETQKVSFFTSLWNHPFF
TISCITLIGLFFAGIHKRVVAPSIIAARCRTVLAEYNMSCDDTGKLILKPRPHVQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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