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Report for CCDS52555.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52555.1 Public Mus musculus 8 Clcn3 23 108 98 CCDS HistoryNCBI Gene:12725Re-query CCDS DB by CCDS ID:52555.1Re-query CCDS DB by GeneID:12725See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52555.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004430.13 ENSMUSP00000004430.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004430.13Link to Ensembl Protein Viewer:ENSMUSP00000004430.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000004430Re-query CCDS DB by Protein ID:ENSMUSP00000004430
Original member NCBI NM_173874.1 NP_776299.1 Updated not alive Link to Nucleotide Sequence:NM_173874.1Link to Protein Sequence:NP_776299.1Re-query CCDS DB by Nucleotide ID:NM_173874Re-query CCDS DB by Protein ID:NP_776299
Current member NCBI NM_173874.2 NP_776299.1 Accepted alive Link to Nucleotide Sequence:NM_173874.2Link to Protein Sequence:NP_776299.1Re-query CCDS DB by Nucleotide ID:NM_173874Re-query CCDS DB by Protein ID:NP_776299Link to BLAST:NP_776299.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_776299.1 866 P51791-3 866 100% 0 0

Chromosomal Locations for CCDS 52555.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 60913017 60913175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 60914753 60914828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 60919340 60919556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 60922790 60923188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 60927232 60927418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 60929071 60929616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 60930681 60930761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 60933081 60933287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 60934485 60934607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 60937300 60937487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 60938548 60938647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 60941257 60941414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 60975732 60975891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2601 nt):
ATGGAGTCTGAGCAGCTGTTCCATAGAGGCTACTATAGAAACAGCTACAACAGCATAACCAGCGCGAGTA
GCGATGAGGAGCTCCTAGATGGAGCAGGTGCCATTATGGACTTTCAGACTTCTGAAGATGACAATTTGTT
AGACGGGGACACAGCAGCTGGAACTCATTATACAATGACAAATGGAGGCAGCATTAATAGCTCTACACAC
TTGCTGGATCTTTTGGATGAGCCTATCCCAGGTGTCGGTACCTACGATGATTTCCATACTATTGACTGGG
TGCGAGAGAAGTGTAAGGACAGAGAAAGGCACAGACGGATCAACAGTAAAAAAAAAGAATCAGCATGGGA
AATGACAAAAAGTCTGTATGACGCCTGGTCAGGATGGCTTGTTGTTACACTGACGGGACTGGCATCAGGG
GCACTAGCTGGATTGATAGACATTGCTGCTGACTGGATGACTGACCTGAAGGAGGGCATCTGCCTCAGTG
CATTGTGGTACAACCATGAACAGTGTTGTTGGGGCTCTAATGAGACAACGTTTGAAGAGAGGGATAAATG
TCCACAGTGGAAAACATGGGCAGAGTTAATCATTGGCCAAGCAGAGGGCCCTGGATCTTATATCATGAAC
TACATCATGTACATCTTTTGGGCTTTGAGTTTTGCCTTTCTTGCAGTTTCTTTGGTGAAAGTATTTGCTC
CATATGCCTGTGGCTCTGGAATTCCAGAGATTAAAACTATTTTGAGTGGATTTATCATCAGAGGATACTT
GGGAAAATGGACTTTAATGATTAAAACTATCACGTTAGTGCTGGCTGTGGCATCAGGTTTGAGTTTAGGA
AAAGAAGGTCCCCTGGTACATGTTGCCTGCTGCTGTGGAAACATCTTTTCCTACCTCTTTCCAAAGTATA
GCACCAATGAAGCTAAAAAGAGGGAGGTGCTGTCAGCCGCCTCAGCTGCTGGGGTTTCTGTGGCTTTTGG
TGCACCGATCGGAGGAGTTCTTTTTAGCTTGGAGGAGGTTAGCTATTATTTTCCTCTCAAAACTTTATGG
AGATCATTTTTTGCTGCTTTGGTGGCAGCATTTGTTTTGAGATCCATCAATCCATTTGGTAACAGCCGTC
TGGTCCTCTTTTATGTGGAGTATCATACACCATGGTACCTTTTTGAACTGTTTCCTTTTATTCTCCTAGG
GGTATTTGGAGGGCTTTGGGGAGCTTTTTTTATTAGGGCAAATATTGCCTGGTGTCGTCGACGCAAGTCC
ACCAAATTTGGAAAGTATCCTGTTCTCGAAGTCATTATTGTTGCAGCCATTACTGCTGTGATAGCCTTCC
CCAACCCATACACAAGGCTCAACACCAGTGAACTGATTAAAGAGCTGTTTACAGATTGTGGGCCGTTGGA
ATCCTCCTCTCTCTGTGACTACAGAAATGACATGAATGCCAGTAAAATTGTTGACGATATTCCTGACCGT
CCAGCAGGCGTTGGAGTATATTCAGCTATCTGGCAGTTGTGCCTAGCGCTCATATTTAAAATAATAATGA
CAGTATTCACTTTTGGTATCAAGGTCCCGTCAGGCTTGTTTATCCCCAGCATGGCCATTGGAGCCATTGC
AGGGAGAATTGTGGGGATCGCTGTGGAGCAGCTTGCCTACTATCACCACGACTGGTTTATCTTCAAGGAG
TGGTGTGAGGTTGGGGCTGACTGCATCACTCCCGGGCTGTATGCCATGGTTGGGGCTGCTGCGTGCTTAG
GTGGTGTGACAAGAATGACTGTGTCTCTGGTGGTTATTGTTTTTGAACTTACTGGAGGCTTGGAATATAT
TGTTCCTCTTATGGCTGCAGTAATGACCAGTAAATGGGTTGGTGATGCCTTTGGTAGGGAAGGTATTTAT
GAAGCACACATCCGACTAAATGGGTACCCTTTCTTGGATGCAAAAGAAGAATTCACTCATACAACCCTGG
CTGCTGATGTTATGAGACCTCGAAGAAGTGACCCTCCCTTAGCTGTTTTGACACAGGACAATATGACAGT
AGATGACATAGAAAACATGATTAATGAAACCAGCTATAATGGCTTTCCTGTTATAATGTCAAAAGAATCT
CAGAGATTAGTGGGATTTGCCCTCAGAAGAGACCTGACTATTGCAATAGAAAGTGCCAGAAAAAAACAAG
AAGGGATTGTTGGCAGTTCTCGGGTGTGTTTTGCACAGCATACTCCATCTCTTCCAGCAGAAAGTCCACG
GCCATTAAAACTGAGAAGCATCCTTGACATGAGCCCTTTTACAGTGACAGACCACACCCCAATGGAGATT
GTGGTAGACATCTTTCGAAAGCTTGGTCTGAGGCAGTGCCTTGTAACTCACAACGGGATTGTCTTGGGGA
TCATCACAAAGAAGAACATTTTAGAGCATCTCGAGCAACTAAAGCAGCACGTGGAGCCCTTGACGCCTCC
TTGGCATTATAACAAAAAAAGATATCCTCCGTCATATGGCCCAGACGGCAAACCAAGACCCCGCTTCAAT
AATGTTCAACTGAGTCCTGTAGATGAGGACAGAGAGGAGACAGAAGAGGAAGTTCGTTTGTTGAATAGCA
CAATTCTTTAA

Translation (866 aa):
MESEQLFHRGYYRNSYNSITSASSDEELLDGAGAIMDFQTSEDDNLLDGDTAAGTHYTMTNGGSINSSTH
LLDLLDEPIPGVGTYDDFHTIDWVREKCKDRERHRRINSKKKESAWEMTKSLYDAWSGWLVVTLTGLASG
ALAGLIDIAADWMTDLKEGICLSALWYNHEQCCWGSNETTFEERDKCPQWKTWAELIIGQAEGPGSYIMN
YIMYIFWALSFAFLAVSLVKVFAPYACGSGIPEIKTILSGFIIRGYLGKWTLMIKTITLVLAVASGLSLG
KEGPLVHVACCCGNIFSYLFPKYSTNEAKKREVLSAASAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLW
RSFFAALVAAFVLRSINPFGNSRLVLFYVEYHTPWYLFELFPFILLGVFGGLWGAFFIRANIAWCRRRKS
TKFGKYPVLEVIIVAAITAVIAFPNPYTRLNTSELIKELFTDCGPLESSSLCDYRNDMNASKIVDDIPDR
PAGVGVYSAIWQLCLALIFKIIMTVFTFGIKVPSGLFIPSMAIGAIAGRIVGIAVEQLAYYHHDWFIFKE
WCEVGADCITPGLYAMVGAAACLGGVTRMTVSLVVIVFELTGGLEYIVPLMAAVMTSKWVGDAFGREGIY
EAHIRLNGYPFLDAKEEFTHTTLAADVMRPRRSDPPLAVLTQDNMTVDDIENMINETSYNGFPVIMSKES
QRLVGFALRRDLTIAIESARKKQEGIVGSSRVCFAQHTPSLPAESPRPLKLRSILDMSPFTVTDHTPMEI
VVDIFRKLGLRQCLVTHNGIVLGIITKKNILEHLEQLKQHVEPLTPPWHYNKKRYPPSYGPDGKPRPRFN
NVQLSPVDEDREETEEEVRLLNSTIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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