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Report for CCDS52437.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52437.1 Public Mus musculus 7 Pkp3 23 108 98 CCDS HistoryNCBI Gene:56460Re-query CCDS DB by CCDS ID:52437.1Re-query CCDS DB by GeneID:56460See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52437.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106039.8 ENSMUSP00000101654.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106039.8Link to Ensembl Protein Viewer:ENSMUSP00000101654.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106039Re-query CCDS DB by Protein ID:ENSMUSP00000101654
Original member NCBI NM_001162924.1 NP_001156396.1 Updated not alive Link to Nucleotide Sequence:NM_001162924.1Link to Protein Sequence:NP_001156396.1Re-query CCDS DB by Nucleotide ID:NM_001162924Re-query CCDS DB by Protein ID:NP_001156396
Current member NCBI NM_001162924.2 NP_001156396.1 Accepted alive Link to Nucleotide Sequence:NM_001162924.2Link to Protein Sequence:NP_001156396.1Re-query CCDS DB by Nucleotide ID:NM_001162924Re-query CCDS DB by Protein ID:NP_001156396Link to BLAST:NP_001156396.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156396.1 822 Q9QY23-2 822 100% 0 0

Chromosomal Locations for CCDS 52437.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 141078324 141078434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141079906 141080101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141082342 141082421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141082555 141083186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141083263 141083386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141084055 141084259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141087636 141087810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141088284 141088401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141088481 141088651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141088739 141088924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141089245 141089398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141089569 141089761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141089856 141089943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141090131 141090166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2469 nt):
ATGGAGCCCACCGCAGGATCTCGGACCCGGATGGAGCCCAGAAGGAATTGTCCTACAGCAGGGACCTCCA
GAATGAGCCAGGGAGCCAGTGGGGGCCAGACCAGCGGCAAGCCTGAGACTGGTGTTTGCTCCCTGGCTCT
GCCTTCGGACCTACAGCTGGATCGCCGGGGTGCGGAGGGACCGGAGGCTGATCGACTTAGAGCTGCCAGA
GTCCAGGAGCAAGTCCGAGCCCGCCTCCTGCAGCTGGGCCAGCAGTCGCGGCACAATGGGTCTGCTGAGC
TTGATGGCTCCGCGGAGAGCGCCAGAGGCATGCCCAGAGGTCAATATCACACTATGCAGACTGGCTTCAG
CTCCCGATCCCAGGGCATGAGTGGAGACAAGACCTCGACCTTCCGGCCCATCGCCAAGCCGGCCTACAGC
CCAGCTTCCTGGTCCTCCCGCTCAGCCGTGGATCTGACGTGCAGTCGGAGGCTGAGTTCTGCCCACAATG
GGGGCAGTGCCTTTGGGGCTGTGGGATATGGGGGTACCCAGCCCACTCCACCTATGCCCACCCGGCCAGT
GTCCTTCCATGAGCGAGGTGGGGCAGCCAGCAGAGCTGACTATGACACATTATCCCTGCGCTCACTGAGG
CTGGGGCCAGGGGGCCTGGATGACCGTTACAGCGTGGTATCTGAGCAACTGGAGCCTGCAGCCGCCTCTA
CCTACAGGGCCTATGCTTACGAGCGCCAGGCTAGCTCCGGCTCTAGCCGAGCAGGGGGCCTGGACTGGCC
AGAGGCCACAGAGGGACCACCCAGCAGGACCATCCGTGCACCTGCCATGCGAACCCTGCAAAGATTTCAG
AGCAGCCACCGAAGCCGTGGGGGTACCGGGTCAGTGTCAGGTGCCGGCTTGGAGCCAGTGGCCCGAGCCC
CATCTGTGCGCAGCCTCAGTCTTAGCCTGGCTGACTCAGGCCACCTGCCAGATGTACGCGGGCTGGACAG
CTACACGGGCCATCGAACCCTGCAGAGGCTCAGCAGTGGCTTTGATGACATTGACCTGCCTTCAGCAGTC
AAGTACCTCATGGCCTCAGACCCCAACCTGCAGGTGCTGGGAGCAGCTTACATCCAGCACAGGTGTTACA
GTGATGCCGCCGCCAAGAAGCAGGCTCGCAGCCTTCAGGCAGTGCCTAGACTGGTGAAGCTCTTCAACCA
CGCCAACCAGGAGGTGCAGCGCCACGCCACAGGTGCCATGCGCAACCTCATCTACGACAATGTAGACAAC
AAGCTGGCGTTGGTAGAGGAGAATGGCATTTTTGAGCTGTTGCGGACACTTCGAGAGCAGGATGATGAGC
TACGCAAAAATGTTACAGGGATCCTATGGAACCTGTCCTCCAGTGACCACCTAAAGGACCGCCTCGCCCG
GGATACACTGGAGCAGCTCACAGATCTGGTGCTGAGCCCCCTGTCAGGGGCAGGTGGGCCTCCCCTCATC
CAGCAGAATGCCTCAGAGGCAGAGATCTTCTACAATGCTACTGGCTTCCTCAGGAACCTCAGCTCAGCCT
CCCAGGCCACTCGGCAGAAGATGCGCGAGTGCCATGGGCTAGTGGATGCTCTGGTCACCTACATCAACCA
TGCCCTGGACGTTGGCAAGTGTGAGGACAAGAGTGTGGAAAATGCTGTGTGTGTGCTGAGGAACCTGTCC
TACCGCCTCTACGACGAGATGCCGCCATCAGCCTTGCAGCGGCTTGAAGGCCGGGGCCGCAGGGACATGG
CAGGGGCTCCGCCTGGTGAAATGGTAGGCTGCTTCACACCTCAGAGTCGGCGGCTGCGAGAGCTTCCTCT
CACAGCTGATGCACTCACCTTTGCCGAAGTATCTAAGGATCCCAAGGGCCTCGAATGGCTGTGGAGCCCC
CAGATTGTGGGGTTGTACAACCGACTGCTGCAGCGCTGTGAACTAAATCGGCATACAACGGAGGCGGCCG
CAGGGGCGCTACAGAATATCACCGCGGGCGACCGCAGGTGGGCAGGTGTGCTGAGCCGCCTGGCCCTGGA
ACAGGAGCGAATCCTGAACCCCTTGCTGGACCGCGTTCGCACCGCTGACCACAACCAACTGCGCTCACTG
ACTGGCCTCATCCGAAACCTGTCTCGGAATGCCAGGAACAAGGACGAGATGTCCACAAAGGTAGTGAGCC
ACCTGATTGAGAAGCTTCCTGGTAGTGTGGGTGAGAAGTGTCCCCCAGCTGAGGTGCTGGTCAACATCAT
AGCCGTGCTCAACAACCTGGTGGTAGCCAGCCCCATTGCTGCCCGGGACCTGCTCTACTTTGATGGCCTC
CGAAAGCTGGTCTTCATCAAAAAGAAGAGGGATAGCCCCGACAGTGAGAAGTCTTCCCGGGCAGCCTCCA
GCCTCTTGGCCAACCTCTGGCAGTACAGCAAGCTCCACCGTGACTTCCGGGCGAAAGGCTACCGGAAAGA
GGACTTCCTGGGTCCATAG

Translation (822 aa):
MEPTAGSRTRMEPRRNCPTAGTSRMSQGASGGQTSGKPETGVCSLALPSDLQLDRRGAEGPEADRLRAAR
VQEQVRARLLQLGQQSRHNGSAELDGSAESARGMPRGQYHTMQTGFSSRSQGMSGDKTSTFRPIAKPAYS
PASWSSRSAVDLTCSRRLSSAHNGGSAFGAVGYGGTQPTPPMPTRPVSFHERGGAASRADYDTLSLRSLR
LGPGGLDDRYSVVSEQLEPAAASTYRAYAYERQASSGSSRAGGLDWPEATEGPPSRTIRAPAMRTLQRFQ
SSHRSRGGTGSVSGAGLEPVARAPSVRSLSLSLADSGHLPDVRGLDSYTGHRTLQRLSSGFDDIDLPSAV
KYLMASDPNLQVLGAAYIQHRCYSDAAAKKQARSLQAVPRLVKLFNHANQEVQRHATGAMRNLIYDNVDN
KLALVEENGIFELLRTLREQDDELRKNVTGILWNLSSSDHLKDRLARDTLEQLTDLVLSPLSGAGGPPLI
QQNASEAEIFYNATGFLRNLSSASQATRQKMRECHGLVDALVTYINHALDVGKCEDKSVENAVCVLRNLS
YRLYDEMPPSALQRLEGRGRRDMAGAPPGEMVGCFTPQSRRLRELPLTADALTFAEVSKDPKGLEWLWSP
QIVGLYNRLLQRCELNRHTTEAAAGALQNITAGDRRWAGVLSRLALEQERILNPLLDRVRTADHNQLRSL
TGLIRNLSRNARNKDEMSTKVVSHLIEKLPGSVGEKCPPAEVLVNIIAVLNNLVVASPIAARDLLYFDGL
RKLVFIKKKRDSPDSEKSSRAASSLLANLWQYSKLHRDFRAKGYRKEDFLGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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