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Report for CCDS52422.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52422.1 Public Mus musculus 7 Ebf3 23 108 98 CCDS HistoryNCBI Gene:13593Re-query CCDS DB by CCDS ID:52422.1Re-query CCDS DB by GeneID:13593See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52422.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000210774.1 ENSMUSP00000147829.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000210774.1Link to Ensembl Protein Viewer:ENSMUSP00000147829.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000210774Re-query CCDS DB by Protein ID:ENSMUSP00000147829
Original member NCBI NM_001113415.1 NP_001106886.1 Updated not alive Link to Nucleotide Sequence:NM_001113415.1Link to Protein Sequence:NP_001106886.1Re-query CCDS DB by Nucleotide ID:NM_001113415Re-query CCDS DB by Protein ID:NP_001106886
Current member NCBI NM_001113415.2 NP_001106886.1 Accepted alive Link to Nucleotide Sequence:NM_001113415.2Link to Protein Sequence:NP_001106886.1Re-query CCDS DB by Nucleotide ID:NM_001113415Re-query CCDS DB by Protein ID:NP_001106886Link to BLAST:NP_001106886.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106886.1 596 O08791-1 596 100% 0 0

Chromosomal Locations for CCDS 52422.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 137196371 137196402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 137198492 137198689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 137199094 137199282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 137200383 137200560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 137201126 137201191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 137206185 137206273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 137225143 137225269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 137225756 137225886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 137231164 137231308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 137235907 137235988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 137307485 137307553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 137309299 137309372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 137312349 137312404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 137313093 137313156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 137313518 137313674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 137313780 137313913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1791 nt):
ATGTTTGGGATTCAGGAGAATATTCCGCGCGGGGGGACGACCATGAAGGAGGAGCCGCTGGGCAGCGGCA
TGAACCCGGTGCGCTCGTGGATGCACACGGCAGGCGTGGTGGACGCCAACACGGCCGCCCAGAGCGGCGT
GGGGCTGGCGCGGGCGCACTTCGAGAAGCAGCCTCCTTCCAACCTCCGGAAATCCAATTTCTTCCACTTC
GTGCTGGCGCTCTACGACAGGCAGGGGCAGCCGGTGGAGATCGAAAGGACCGCTTTTGTGGACTTTGTGG
AGAAAGAGAAAGAGCCGAACAACGAGAAAACCAACAACGGCATTCACTACAAGCTGCAGCTACTGTACAG
CAATGGCGTCAGAACAGAGCAAGATCTGTATGTCCGCCTCATAGATTCAATGACCAAACAGGCCATCGTG
TATGAAGGCCAGGACAAGAATCCGGAGATGTGCCGCGTGCTGCTGACCCACGAGATCATGTGCAGCCGGT
GCTGTGACAAGAAGAGTTGTGGCAATAGAAACGAGACACCCTCAGACCCTGTAATCATTGACAGATTCTT
TCTAAAGTTCTTCCTCAAGTGCAATCAGAACTGCCTGAAGAATGCGGGCAACCCTCGGGACATGCGGAGG
TTCCAGGTCGTTGTATCGACAACAGTCAACGTGGACGGCCACGTGCTGGCCGTGTCTGACAACATGTTTG
TGCACAACAATTCCAAACACGGGAGGCGGGCCCGCCGCCTAGACCCGTCAGAAGGTACGGCCCCTTCTTA
TCTGGAAAATGCCACTCCGTGTATCAAGGCTATCAGCCCCAGTGAAGGCTGGACCACGGGGGGTGCCACT
GTGATCATAATCGGGGACAACTTCTTTGACGGTCTACAAGTTGTGTTCGGAACTATGTTGGTGTGGAGTG
AGCTGATAACCCCCCACGCCATCCGAGTGCAGACGCCGCCTCGACACATCCCTGGAGTTGTTGAAGTGAC
CCTCTCCTACAAGTCTAAGCAGTTCTGCAAAGGCGCTCCTGGACGCTTTGTCTACACTGCCCTTAATGAG
CCAACCATAGATTACGGCTTCCAGAGGTTGCAGAAAGTGATACCCAGACATCCAGGTGACCCCGAAAGGT
TACCCAAGGAAGTGTTACTGAAGAGGGCAGCAGACCTTGTGGAAGCCTTGTATGGGATGCCTCACAATAA
CCAGGAGATCATCCTGAAGAGAGCGGCCGACATTGCTGAGGCGTTGTACAGCGTTCCCCGCAATCACAAC
CAGATCCCCACCCTGGGCAACACCCCAGCACACACTGGCATGATGGGTGTGAACTCCTTCAGCAGCCAGC
TAGCCGTTAATGTGTCAGAGACCTCACAAGCCAATGACCAAGTCGGCTACAGTCGCAATACAAGCAGCGT
GTCCCCGCGAGGCTACGTCCCCAGCAGTACTCCCCAGCAGTCCAATTACAACACAGTCAGCACTAGCATG
AATGGATATGGAAGTGGCGCCATGGCCAATCTAGGGGTCCCTGGCTCGCCTGGATTTCTTAATGGCTCCT
CCGCTAACTCTCCCTACGGCATAGTGCCGTCCAGCCCCACCATGGCAGCCTCTTCGGTCACCCTCCCTTC
AAACTGTAGCAGCACACACGGCATTTTCTCATTCTCACCTGCCAATGTCATCTCCGCAGTGAAACAGAAG
AGCGCTTTTGCGCCCGTGGTCCGGCCCCAAGCCTCGCCTCCTCCTTCCTGCACCAGCGCCAACGGGAACG
GACTGCAAGCTATGTCTGGGCTGGTAGTCCCGCCCATGTGA

Translation (596 aa):
MFGIQENIPRGGTTMKEEPLGSGMNPVRSWMHTAGVVDANTAAQSGVGLARAHFEKQPPSNLRKSNFFHF
VLALYDRQGQPVEIERTAFVDFVEKEKEPNNEKTNNGIHYKLQLLYSNGVRTEQDLYVRLIDSMTKQAIV
YEGQDKNPEMCRVLLTHEIMCSRCCDKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKNAGNPRDMRR
FQVVVSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEGTAPSYLENATPCIKAISPSEGWTTGGAT
VIIIGDNFFDGLQVVFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYTALNE
PTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALYGMPHNNQEIILKRAADIAEALYSVPRNHN
QIPTLGNTPAHTGMMGVNSFSSQLAVNVSETSQANDQVGYSRNTSSVSPRGYVPSSTPQQSNYNTVSTSM
NGYGSGAMANLGVPGSPGFLNGSSANSPYGIVPSSPTMAASSVTLPSNCSSTHGIFSFSPANVISAVKQK
SAFAPVVRPQASPPPSCTSANGNGLQAMSGLVVPPM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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