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Report for CCDS52417.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52417.1 Public Mus musculus 7 Ctbp2 23 108 98 CCDS HistoryNCBI Gene:13017Re-query CCDS DB by CCDS ID:52417.1Re-query CCDS DB by GeneID:13017See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52417.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000169570.7 ENSMUSP00000130294.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169570.7Link to Ensembl Protein Viewer:ENSMUSP00000130294.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169570Re-query CCDS DB by Protein ID:ENSMUSP00000130294
Original member NCBI NM_001170744.1 NP_001164215.1 Updated not alive Link to Nucleotide Sequence:NM_001170744.1Link to Protein Sequence:NP_001164215.1Re-query CCDS DB by Nucleotide ID:NM_001170744Re-query CCDS DB by Protein ID:NP_001164215
Current member NCBI NM_001170744.2 NP_001164215.1 Accepted alive Link to Nucleotide Sequence:NM_001170744.2Link to Protein Sequence:NP_001164215.1Re-query CCDS DB by Nucleotide ID:NM_001170744Re-query CCDS DB by Protein ID:NP_001164215Link to BLAST:NP_001164215.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164215.1 988 P56546-2 988 100% 0 0

Chromosomal Locations for CCDS 52417.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 132988171 132988351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132989990 132990107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132990431 132990558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132991039 132991169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132991562 132991776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132995159 132995365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132998807 132998951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132999191 132999345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133013518 133015204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2967 nt):
ATGCCGGTTCCCAGCAGGCACATCAATATTGGCCGTTCTCAGAGCTGGGATGCTGCTGGCTGGTATGAGG
GCCCTTGGGAGAATGCTGGACCTCCAGGGAGGAGAAGTTCTCTGACGTATGGCCCTGGAGAAGGGACCTG
GTGCGAGCTGCTAAACCATCGTGCCCAGGATACTGAGTCCTACCTGTCCCGGGAAGCTTTTTATAACTCA
CTGGCATCAAGAAAGGGCTCCGTGCCTGACTTCACCTTCTACGACAGCAGGCAGGCAGTGATGTCTGGCC
GTGGCTCCGTGCTGCCACAAGACTACTATGGCGACCCATCCAGGGGCACCAGGGTACCCAAGGAGCCTCC
CTTCTATCGGGACCCAGGAACCAGCCGGCCGGTGCCCAGCTACGGAATGCTTGGCAGCAGAATGCCATGG
GAGCAGGTACAAGGCCAGTTACCTGCTCTGCAGGACACTGGCCACCTGTACCCGGAATCTGGGGGTAAAA
CTGTCCCGCATGGCCAGCGGACACACGGCAGGGCTCCATCTCCTGGGAGGTATGGAAGGGAACAGCCTGA
TACCAGATTAGGGATAGAGGTACCTACCTATTCCCCCAACTCCAGTCAGGTCTACAACGATATCTGCGAA
AGACCTGTTGACTCAACCCCTGCCAGACAGGTGGCCCCAACATGCCTGGTTGTGGACCCCAGCTCAGCTG
TCCCTACTGAGAACAGCACGGGGGTGGCCCCGGGTTCCCTGAATAGAGGCTATGGGCCTACCCGAGAAAG
CATCCATTCAAAGCTGGCTTATGAGAATTACGAAGCTGACTTGTCTACATTCCAAGGACCTGGGGGCAAG
AGGACCATGTACCCTGAGTTTTTGGCCCTGCTGAGGGCAGAGGGTGTGGCAGAGGCCACCCTAGCAGCCC
TGTTACAGCAAGGCTTTGACTCCCCAGCTGTCTTGGCCACCCTGGAGGATGCTGACATCAAGTCTGTTGC
ACCCAACCTGGGCCAGGCCCGAGTCCTAAGCCGCCTAGCCAGCAGCTGCAGGACAGAGATGCAGTTTCGG
AGACAGGACCGGACGGGCCCTCTACCCCGCAATAGGTCCAGTAGCTTCAGCCACCGAAGTGAGCTGCTGC
CCAATGACATGGCCTCACTGGGTACCACAGCCCTGCAGTTTCACCCTGCTGGACCTTTGCAGACACCCTC
TCCCCGAGCTGGAGATCTAGGTCGCCGCCCCTCCAGTGCACCTTCCCAGCACCTCTTGGAGACAGCAGCT
ACTTATTCCACCCCAGTGGTGGGGTCCCAAACCCCCCACTTACCCTCCAACTCTGGATATAGCTCTCCTA
CCCCCTGTGCCCTAACAGCACGGCTGGCCTCCTCATATCCTTCACAAGCTGGGGTAGCCTTGACTGCTAA
CCCAGGCCCCTCTGCTCCCCTTCACTCAAATCCCAGAACTGCCTACTCCACCTCGTACACGGTGCCCATG
GAACTGCTTAAGAGGGAACGCAGCATGACCGCCTCTCCGCTGCCCAGCCCGCACGGCAGCCCCCAGCTCC
TGCGGAAACCTGGAGCAGCCCCCGTGGAGCCGTCTACCCTGCCACCAGTCAGCCAAAGTCTCCACACACC
TCATTCACCGTACCAGAAGGTGGCCCGGCGGACTGGGGCTCCCATCATCGTGTCAACCATGCTAACTCCA
GAACCAAGTATCCGCCCCCAGATCATGAACGGCCCCCTGCACCCCCGCCCCCTGGTGGCACTGCTGGATG
GCAGAGACTGCACTGTGGAGATGCCCATCCTGAAGGACCTGGCCACTGTGGCCTTCTGTGATGCACAGTC
CACTCAGGAAATCCATGAGAAGGTGTTGAATGAGGCTGTGGGTGCCATGATGTACCACACCATCACCCTC
ACCAGGGAAGACCTGGAGAAGTTCAAGGCCCTGAGAGTGATCGTGCGAATCGGTAGTGGCTACGACAACG
TGGACATCAAGGCTGCTGGCGAGCTCGGGATCGCTGTGTGCAACATCCCATCTGCTGCAGTGGAGGAGAC
AGCAGATTCGACAGTCTGCCACATTCTCAATCTGTATCGGCGGAACACATGGCTCTACCAGGCCCTCCGA
GAAGGCACTCGAGTACAGAGTGTGGAACAGATCCGTGAGGTCGCCTCAGGAGCTGCTCGGATCCGAGGGG
AAACACTGGGCCTCATTGGCTTTGGTCGCACAGGGCAGGCAGTTGCTGTTCGAGCCAAGGCCTTTGGATT
CAGCGTCATATTTTATGACCCCTACTTACAGGATGGGATAGAACGATCTCTGGGCGTGCAAAGGGTCTAC
ACCCTGCAGGACTTGCTATATCAGAGCGACTGCGTCTCCTTGCACTGCAACCTGAACGAGCACAACCATC
ACCTCATCAATGACTTCACTATCAAGCAGATGAGGCAAGGTGCATTCCTTGTGAATGCAGCCCGAGGTGG
CCTGGTGGATGAGAAAGCCTTAGCTCAGGCCCTCAAGGAGGGCAGGATACGAGGAGCTGCCCTGGATGTG
CACGAGTCTGAGCCCTTCAGCTTCGCCCAGGGCCCATTGAAGGATGCTCCAAATCTCATCTGCACACCAC
ACACAGCCTGGTACAGTGAACAAGCATCACTAGAGATGAGGGAAGCAGCAGCCACTGAGATCCGCCGAGC
AATCACAGGTCGCATCCCAGAAAGCTTACGAAACTGTGTCAACAAAGAATTCTTCGTGACTTCAGCTCCT
TGGTCAGTCATTGACCAGCAAGCAATTCACCCCGAGCTCAATGGTGCCACATACAGGTATCCACCCGGCA
TTGTAGGTGTGGCTCCAGGAGGGCTTCCTCCAGCGATGGAAGGGATCATCCCTGGGGGCATCCCCGTGAC
TCACAACCTCCCCACAGTGGCACACCCCTCCCAAGCTCCTTCCCCCAACCAGCCCACAAAACACGGGGAC
AATCGAGAGCACCCCAACGAGCAATAG

Translation (988 aa):
MPVPSRHINIGRSQSWDAAGWYEGPWENAGPPGRRSSLTYGPGEGTWCELLNHRAQDTESYLSREAFYNS
LASRKGSVPDFTFYDSRQAVMSGRGSVLPQDYYGDPSRGTRVPKEPPFYRDPGTSRPVPSYGMLGSRMPW
EQVQGQLPALQDTGHLYPESGGKTVPHGQRTHGRAPSPGRYGREQPDTRLGIEVPTYSPNSSQVYNDICE
RPVDSTPARQVAPTCLVVDPSSAVPTENSTGVAPGSLNRGYGPTRESIHSKLAYENYEADLSTFQGPGGK
RTMYPEFLALLRAEGVAEATLAALLQQGFDSPAVLATLEDADIKSVAPNLGQARVLSRLASSCRTEMQFR
RQDRTGPLPRNRSSSFSHRSELLPNDMASLGTTALQFHPAGPLQTPSPRAGDLGRRPSSAPSQHLLETAA
TYSTPVVGSQTPHLPSNSGYSSPTPCALTARLASSYPSQAGVALTANPGPSAPLHSNPRTAYSTSYTVPM
ELLKRERSMTASPLPSPHGSPQLLRKPGAAPVEPSTLPPVSQSLHTPHSPYQKVARRTGAPIIVSTMLTP
EPSIRPQIMNGPLHPRPLVALLDGRDCTVEMPILKDLATVAFCDAQSTQEIHEKVLNEAVGAMMYHTITL
TREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTVCHILNLYRRNTWLYQALR
EGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQDGIERSLGVQRVY
TLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDV
HESEPFSFAQGPLKDAPNLICTPHTAWYSEQASLEMREAAATEIRRAITGRIPESLRNCVNKEFFVTSAP
WSVIDQQAIHPELNGATYRYPPGIVGVAPGGLPPAMEGIIPGGIPVTHNLPTVAHPSQAPSPNQPTKHGD
NREHPNEQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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