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Report for CCDS52375.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52375.1 Public Mus musculus 7 Knop1 23 108 98 CCDS HistoryNCBI Gene:66356Re-query CCDS DB by CCDS ID:52375.1Re-query CCDS DB by GeneID:66356See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52375.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106549.8 ENSMUSP00000102159.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106549.8Link to Ensembl Protein Viewer:ENSMUSP00000102159.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106549Re-query CCDS DB by Protein ID:ENSMUSP00000102159
Original member NCBI NM_001168220.1 NP_001161692.1 Updated not alive Link to Nucleotide Sequence:NM_001168220.1Link to Protein Sequence:NP_001161692.1Re-query CCDS DB by Nucleotide ID:NM_001168220Re-query CCDS DB by Protein ID:NP_001161692
Current member NCBI NM_001168220.2 NP_001161692.1 Accepted alive Link to Nucleotide Sequence:NM_001168220.2Link to Protein Sequence:NP_001161692.1Re-query CCDS DB by Nucleotide ID:NM_001168220Re-query CCDS DB by Protein ID:NP_001161692Link to BLAST:NP_001161692.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161692.1 318 Q9Z2Q2-2 318 100% 0 0

Chromosomal Locations for CCDS 52375.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 118845783 118846094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118848449 118848574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118850621 118850689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 118852889 118853338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGGTCAGCAAGACCCAGAAAGCAGACCTGGGCCCACAACTCCCAGAGAAGAAGAAAAAGAAGAAGAAGA
AAAAGAGAGTGGTTGCAAATGTCTCAGAACCAGAGACTCAATACTCAGTCTTAAACAGTAATGATTATTT
TATAGACGCTTCTCCTCCGAGGGCCACGTCCCCTTCTAACAATGTGGATGAGGTGCAGATCCCCGAGATA
TCACTGAGCAAGAGAAAGAAGAAAAAAAAGTCCTGTAGCACTCACTTGGAGGAGTGCCTGGGGGCTGAGC
CTACACGGGCAAGGCAGAAAAAGTCACCTAGCCCTAGAAGGCAGGCCCTTGAGCAGTCAGCAGAAGGCCT
CATCAGAGAGAAGAAAAAGAAGAGGCGGAAGTCCTTATCAAAGGCTGCCTCCCAAGGCTCAGGGCTGAAG
ACCTCCCCAGACCCCAAGCATGCCAAGGAGGAGTCAGACACAGACTTAGAGGTGGTACTGGAGAAAAAAG
GCAACATGGATGAGACCTGCATAGACCAGGTGAGACGGAAGGCCTTGCAAGAAGAGATTGATCGTGAGTC
GGGCAAGACAGAGGCTTCAGAACCCAAAAAGTGGACAGTGGGTTTGTCGGTCAAGACAGAGGCTTCAGAA
CCCAAAAAGTGGACGGGAACCCAGTTTGGCCAGTGGGATACTGCCGGCTTTGAAAATGAAGAACAGAAGC
TAAAATTCCTGAAGCTTATGGGTGGCTTTAAGCATCTGTCCCCGTCATTCAGCCGCCCTCCCAGCATGAC
TATCAGGTCCAACATGGCCCTGGACAAAAAGTCTTCAGAAATGCTCCAGCAGAGTCTGCAGCAGGACTAT
GACCGGGCCATGAGCTGGAAGTACAGCCACGGGGCTGGCCTGGGCTTTAACTCTGAGGCCCGAAAGGTCT
TCTACATTGACCGGAATGCCTCCAAGTCTATCAAGTTGCAAGATTAA

Translation (318 aa):
MVSKTQKADLGPQLPEKKKKKKKKKRVVANVSEPETQYSVLNSNDYFIDASPPRATSPSNNVDEVQIPEI
SLSKRKKKKKSCSTHLEECLGAEPTRARQKKSPSPRRQALEQSAEGLIREKKKKRRKSLSKAASQGSGLK
TSPDPKHAKEESDTDLEVVLEKKGNMDETCIDQVRRKALQEEIDRESGKTEASEPKKWTVGLSVKTEASE
PKKWTGTQFGQWDTAGFENEEQKLKFLKLMGGFKHLSPSFSRPPSMTIRSNMALDKKSSEMLQQSLQQDY
DRAMSWKYSHGAGLGFNSEARKVFYIDRNASKSIKLQD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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