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Report for CCDS52341.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52341.1 Public Mus musculus 7 Ubqln5 23 108 98 CCDS HistoryNCBI Gene:70980Re-query CCDS DB by CCDS ID:52341.1Re-query CCDS DB by GeneID:70980See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52341.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053743.5 ENSMUSP00000062054.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053743.5Link to Ensembl Protein Viewer:ENSMUSP00000062054.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000053743Re-query CCDS DB by Protein ID:ENSMUSP00000062054
Original member Current member NCBI NM_027634.1 NP_081910.1 Accepted alive Link to Nucleotide Sequence:NM_027634.1Link to Protein Sequence:NP_081910.1Re-query CCDS DB by Nucleotide ID:NM_027634Re-query CCDS DB by Protein ID:NP_081910Link to BLAST:NP_081910.1

Chromosomal Locations for CCDS 52341.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 104128083 104129615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1533 nt):
ATGGCACGAGCTAGGGAAGAAGCAGGGGACAGCCAGCTGGTGTCTGGTAGGGAGCCATCCTCACGTATCA
TCAGAGTGTCTGTCAAGACCCCACAGGACTGCCACGAGTTTTTTCTGGCAGAAAATAGCAATGTCCGCCG
CTTTAAGAAGCAAATCTCCAAATACCTTCACTGTAACGCTGACCGATTGGTGCTCATCTTCACTGGGAAG
ATCCTCCGGGATCAAGACATACTGAGCCAGCGTGGCATTCTTGATGGCTCTACAGTCCATGTGGTAGTGA
GGTCTCATTTGAAAGGGTCAGCCTGTACAGGAACTCTGGTAGGCCCCACAGGCCAGTATACCCACCGCTC
AGAACCATCAGCCAAGCTTGGCCGGCTGGCCGGGACCTCACCTGACCTAGCTGATTTCTTCAGCCAGCGT
GTCCAACTGCTGCCTGCGGCACCAGAGTCTGTGGTGCAACTCTTGGAAGATCCTCTGATTCAAGGCCTGG
CAAATGAGAAACATGCCAATGGCGTTCACATTCCGGAAACCTCAAAAACGGTACAGAAACGGGACCCAGC
TCTCAAATTTCCGGAAACCCTTCAGAAGCCCGCGCAATCGCAGGAAGTTCTCCAGGAACACAAGCAGAGG
CTGGAGGCCCTGAAAGCCGTGCCAGGGGGTGACAACGCTATGCATCCCAGCTGCTCTGATATCCATCAGG
TCATGCTCTCCACTCTGGCCTTATTGGTGGCTTCTAAAGGCCACATTTCAGCCTTAGAGCTGTGTAGGGG
AGAAACCAACAATGCTCACAGCAGTTCTGATCCTACCACCATTCCAGCCACTTCTCCTCTGGTCAGGACC
TTGGCACAAGAGGTCAGTACAGGAGGAGTTAGCCAGGTCAAGGGCATAGTTTCAAGTCAGGCCAGTTTAG
GGTGCCGACCTGGTATGCTAGACTTACACTCAGGCTCAGATATCCCCTGCCAAGAAAGCCAGCAGCCCTT
GGAGAAAGTCCCTCTAACCTGTCAACCGAGACTCTCGCCCTGTGTTCTGCGCCTAGCCTTGACTGTCCTG
CAGCAGAATCCATCTCTGGCACATCAGTTGGCAACTGGCAGTCCCCTACTACATCACTTGCCACTTCTCC
CCATCCTCACCAACCCTCGAGCGCTGCAGGCATTGCTACAGATAGAGGAAGGCCTACAGATACTATCCAG
GGAGGTGCCTGAGCTGGGACCATTGTTTCGGGACTCAGCTAAACCACGTGGGGCTAGAGGAGCCCAAGAA
ACTAGGGGTAGAAGACAAGCCCATAGAGAAGATACTACACAACACTCCTTGGCCTTTCTTCAGCTCTTCC
ATTCCTTGGCCAGAGCCTGTTCCCAGTCTTCCCAAACTGCACTGCCCACATCCCTCTTTACTGAAGGTCG
GTACCAGCAAGAACTGGAGGAACTGAAGGCCTTGGGTTTTGCTAACCGTGATGCAAACCTGCAGGCCCTT
GTAGCCACAGATGGAGATATCCACGCCGCCATTGAGATGCTTCTAGGGGCTCCGCAGGATTAG

Translation (510 aa):
MARAREEAGDSQLVSGREPSSRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGK
ILRDQDILSQRGILDGSTVHVVVRSHLKGSACTGTLVGPTGQYTHRSEPSAKLGRLAGTSPDLADFFSQR
VQLLPAAPESVVQLLEDPLIQGLANEKHANGVHIPETSKTVQKRDPALKFPETLQKPAQSQEVLQEHKQR
LEALKAVPGGDNAMHPSCSDIHQVMLSTLALLVASKGHISALELCRGETNNAHSSSDPTTIPATSPLVRT
LAQEVSTGGVSQVKGIVSSQASLGCRPGMLDLHSGSDIPCQESQQPLEKVPLTCQPRLSPCVLRLALTVL
QQNPSLAHQLATGSPLLHHLPLLPILTNPRALQALLQIEEGLQILSREVPELGPLFRDSAKPRGARGAQE
TRGRRQAHREDTTQHSLAFLQLFHSLARACSQSSQTALPTSLFTEGRYQQELEELKALGFANRDANLQAL
VATDGDIHAAIEMLLGAPQD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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