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Report for CCDS52304.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52304.1 Public Mus musculus 7 Tyr 23 108 98 CCDS HistoryNCBI Gene:22173Re-query CCDS DB by CCDS ID:52304.1Re-query CCDS DB by GeneID:22173See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52304.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004770.6 ENSMUSP00000004770.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004770.6Link to Ensembl Protein Viewer:ENSMUSP00000004770.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000004770Re-query CCDS DB by Protein ID:ENSMUSP00000004770
Original member NCBI NM_011661.5 NP_035791.1 Updated not alive Link to Nucleotide Sequence:NM_011661.5Link to Protein Sequence:NP_035791.1Re-query CCDS DB by Nucleotide ID:NM_011661Re-query CCDS DB by Protein ID:NP_035791
Current member NCBI NM_011661.6 NP_035791.1 Accepted alive Link to Nucleotide Sequence:NM_011661.6Link to Protein Sequence:NP_035791.1Re-query CCDS DB by Nucleotide ID:NM_011661Re-query CCDS DB by Protein ID:NP_035791Link to BLAST:NP_035791.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035791.1 533 P11344 533 100% 0 0

Chromosomal Locations for CCDS 52304.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 87429049 87429284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 87437937 87438118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 87472399 87472546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 87483821 87484037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 87492532 87493350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1602 nt):
ATGTTCTTGGCTGTTTTGTATTGCCTTCTGTGGAGTTTCCAGATCTCTGATGGCCATTTTCCTCGAGCCT
GTGCCTCCTCTAAGAACTTGTTGGCAAAAGAATGCTGCCCACCATGGATGGGTGATGGGAGTCCCTGCGG
CCAGCTTTCAGGCAGAGGTTCCTGCCAGGATATCCTTCTGTCCAGTGCACCATCTGGACCTCAGTTCCCC
TTCAAAGGGGTGGATGACCGTGAGTCCTGGCCCTCTGTGTTTTATAATAGGACCTGCCAGTGCTCAGGCA
ACTTCATGGGTTTCAACTGCGGAAACTGTAAGTTTGGATTTGGGGGCCCAAATTGTACAGAGAAGCGAGT
CTTGATTAGAAGAAACATTTTTGATTTGAGTGTCTCCGAAAAGAATAAGTTCTTTTCTTACCTCACTTTA
GCAAAACATACTATCAGCTCAGTCTATGTCATCCCCACAGGCACCTATGGCCAAATGAACAATGGGTCAA
CACCCATGTTTAATGATATCAACATCTACGACCTCTTTGTATGGATGCATTACTATGTGTCAAGGGACAC
ACTGCTTGGGGGCTCTGAAATATGGAGGGACATTGATTTTGCCCATGAAGCACCAGGGTTTCTGCCTTGG
CACAGACTTTTCTTGTTATTGTGGGAACAAGAAATTCGAGAACTAACTGGGGATGAGAACTTCACTGTTC
CATACTGGGATTGGAGAGATGCAGAAAACTGTGACATTTGCACAGATGAGTACTTGGGAGGTCGTCACCC
TGAAAATCCTAACTTACTCAGCCCAGCATCCTTCTTCTCCTCCTGGCAGATCATTTGTAGCAGATCAGAA
GAGTATAATAGCCATCAGGTTTTATGCGATGGAACACCTGAGGGACCACTATTACGTAATCCTGGAAACC
ATGACAAAGCCAAAACCCCCAGGCTCCCATCTTCAGCAGATGTGGAATTTTGTCTGAGTTTGACCCAGTA
TGAATCTGGATCAATGGATAGAACTGCCAATTTCAGCTTTAGAAACACACTGGAAGGATTTGCCAGTCCA
CTCACAGGGATAGCAGATCCTTCTCAAAGTAGCATGCACAATGCCTTACATATCTTTATGAATGGAACAA
TGTCCCAAGTACAGGGATCGGCCAACGATCCCATTTTTCTTCTTCACCATGCTTTTGTGGACAGTATTTT
TGAACAATGGCTGCGAAGGCACCGCCCTCTTTTGGAAGTTTACCCAGAAGCCAATGCACCTATCGGCCAT
AACAGAGACTCTTACATGGTTCCTTTCATACCGCTCTATAGAAATGGTGATTTCTTCATAACATCCAAGG
ATCTGGGATATGACTACAGCTACCTCCAAGAGTCAGATCCAGGCTTTTACAGAAATTATATTGAGCCTTA
CTTGGAACAAGCCAGTCGTATCTGGCCATGGCTTCTTGGGGCAGCACTGGTGGGAGCTGTTATTGCTGCA
GCTCTCTCTGGGCTTAGCAGTAGGCTATGCCTTCAGAAGAAGAAGAAGAAGAAGCAACCCCAGGAGGAAA
GGCAGCCACTCCTCATGGACAAAGACGACTACCACAGCTTGCTGTATCAGAGCCATCTGTGA

Translation (533 aa):
MFLAVLYCLLWSFQISDGHFPRACASSKNLLAKECCPPWMGDGSPCGQLSGRGSCQDILLSSAPSGPQFP
FKGVDDRESWPSVFYNRTCQCSGNFMGFNCGNCKFGFGGPNCTEKRVLIRRNIFDLSVSEKNKFFSYLTL
AKHTISSVYVIPTGTYGQMNNGSTPMFNDINIYDLFVWMHYYVSRDTLLGGSEIWRDIDFAHEAPGFLPW
HRLFLLLWEQEIRELTGDENFTVPYWDWRDAENCDICTDEYLGGRHPENPNLLSPASFFSSWQIICSRSE
EYNSHQVLCDGTPEGPLLRNPGNHDKAKTPRLPSSADVEFCLSLTQYESGSMDRTANFSFRNTLEGFASP
LTGIADPSQSSMHNALHIFMNGTMSQVQGSANDPIFLLHHAFVDSIFEQWLRRHRPLLEVYPEANAPIGH
NRDSYMVPFIPLYRNGDFFITSKDLGYDYSYLQESDPGFYRNYIEPYLEQASRIWPWLLGAALVGAVIAA
ALSGLSSRLCLQKKKKKKQPQEERQPLLMDKDDYHSLLYQSHL


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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